Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Forward (+)

3803836 .. 3809010

Gene Structure 5175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03010.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTGGCCCATTAAATTGGACATAACGTGTATATATTTATTAGTTAATCAGTTTATAATTAACGATTTTGATGTGTGCTTCATCGTCTCCTTCCCTTCATCATCTCCTTCCCTTTACTCATTGCCATCATCGTCGTCTCCAACTCTCCTTGATCTTATGGTCGATCGCCGAATCGCAAGTAGAGACAGCGGGCTGAAGGCGCGTCTAACCGGCACACAAAGGTTCTATTTTTCGGTTGGATTTTGGGTTTTACCATCTGGATATTGTCCATCTTCTCATCTTCCAGACCTTGTTTGGAGTATTGAGCTCGATTCCATAACACCTTGCCGAGTTGTGAAAATGAGCAGTGATCCGATGAATCCACCTGGACTGGTCGTATCGACCACCGAACCCATCCTCTCATTCCTCACCTCAGCTTCCACAGACCCACACCTCTCTCATGAACTCCAGCAAATTGCGTCCAATCTATCCTCCAAACCCAGTGTACCGTACAAGTCTCTCCGAGCTCTTTGGGTTGCATCTGACGCCTCGACCCGACCGCAGTTGGCCCGACTCTTCTCTGGATGCGAGTTCGTCCTCACCAGCCCCAAACCCAGAGAAAAGAGTGAGGAGTTGAAGGCTAGACTTAAGAAGCTGGCTGAAGTTTTGGAGAGGAATGCATATGCAGAACTTGTGAAGGATATTACCCCTAAGAAAGAAACCACTGAGCCTTTCTCTTCTTACAAGGATCAACTCGGCTTTGGTTTACATGTTGTGGTGACCATGTTTACCTGCTATTTGGTAGGATATGCTGCATTCAGAGCTTTGTTTAACCACAGTCCCGTCATGAATGCTGCTGGAGGCATTCTTGGATTGGTCATTGGCATGCTCGTGGAAACATTTATTTTCATAATTAGAACTTCTAGTCAAGATCTCAGATCATCTTCTTCCACATCCAAGCTAAAGAAGAATCAGTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

321

Amino Acids

35.51

Weight (kDa)

8.82

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	779
AccII	CGCG	1 cut(s)	202
AciI	CCGC	2 cut(s)	189, 539
AclWI	GGATC	2 cut(s)	344, 735
AcuI	CTGAAG	2 cut(s)	215, 660
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	486, 491
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	2 cut(s)	26, 748
AgsI	TTSAA	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	6 cut(s)	307, 416, 506, 634, 803, 940
AluI	AGCT	6 cut(s)	307, 416, 506, 634, 803, 940
Alw21I	GWGCWC	2 cut(s)	309, 508
Alw26I	GTCTC	4 cut(s)	91, 141, 177, 501
AlwI	GGATC	2 cut(s)	344, 735
AoxI	GGCC	2 cut(s)	5, 546
ApeKI	GCWGC	2 cut(s)	791, 833
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	6, 547
AsuHPI	GGTGA	3 cut(s)	400, 571, 769
BanII	GRGCYC	2 cut(s)	309, 508
BauI	CACGAG	1 cut(s)	869
Bbv12I	GWGCWC	2 cut(s)	309, 508
BbvCI	CCTCAGC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	778, 820
BccI	CCATC	4 cut(s)	133, 262, 277, 401
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	4 cut(s)	91, 141, 177, 501
BfaI	CTAG	2 cut(s)	621, 903
BfrI	CTTAAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	779
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	2 cut(s)	792, 834
BlsI	GCNGC	2 cut(s)	793, 835
Bme1390I	CCNGG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	6, 547
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	527, 554
BmuI	ACTGGG	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpmI	CTGGAG	2 cut(s)	431, 858
Bpu10I	CCTNAGC	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	525
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	375, 480
Bse3DI	GCAATG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	393, 569, 932
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	3 cut(s)	426, 696, 928
BseNI	ACTGG	2 cut(s)	375, 480
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	778, 820
Bsh1236I	CGCG	1 cut(s)	202
Bsh1285I	CGRYCG	2 cut(s)	166, 539
BshFI	GGCC	2 cut(s)	7, 548
BsiEI	CGRYCG	2 cut(s)	166, 539
BsiHKAI	GWGCWC	2 cut(s)	309, 508
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	804
BsmAI	GTCTC	4 cut(s)	91, 141, 177, 501
BsmBI	CGTCTC	2 cut(s)	91, 141
BsmFI	GGGAC	1 cut(s)	804
BsmI	GAATGC	4 cut(s)	661, 794, 835, 843
BsnI	GGCC	2 cut(s)	7, 548
Bsp1286I	GDGCHC	2 cut(s)	309, 508
Bsp143I	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
BspACI	CCGC	2 cut(s)	189, 539
BspANI	GGCC	2 cut(s)	7, 548
BspCNI	CTCAG	3 cut(s)	425, 697, 927
BspFNI	CGCG	1 cut(s)	202
BspHI	TCATGA	2 cut(s)	439, 825
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	2 cut(s)	344, 735
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	375, 480
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	489, 818
Bst6I	CTCTTC	2 cut(s)	560, 721
BstACI	GRCGYC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	626
BstC8I	GCNNGC	3 cut(s)	191, 636, 866
BstDEI	CTNAG	4 cut(s)	412, 690, 705, 914
BstEII	GGTNACC	1 cut(s)	757
BstF5I	GGATG	3 cut(s)	393, 569, 932
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	6 cut(s)	154, 166, 352, 730, 913, 920
BstMAI	GTCTC	4 cut(s)	91, 141, 177, 501
BstMBI	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
BstMCI	CGRYCG	2 cut(s)	166, 539
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 524, 800
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	752, 868
BstPI	GGTNACC	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	778, 820
BstX2I	RGATCY	1 cut(s)	910
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	910
BsuRI	GGCC	2 cut(s)	7, 548
BtsCI	GGATG	3 cut(s)	393, 569, 932
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	3 cut(s)	352, 487, 702
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	3 cut(s)	191, 636, 866
CciI	TCATGA	2 cut(s)	439, 825
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	6, 547
CseI	GACGC	3 cut(s)	191, 447, 533
Csp6I	GTAC	2 cut(s)	485, 490
CviAII	CATG	5 cut(s)	440, 749, 763, 826, 865
CviQI	GTAC	2 cut(s)	485, 490
DdeI	CTNAG	4 cut(s)	412, 690, 705, 914
DpnI	GATC	6 cut(s)	153, 165, 351, 729, 912, 919
DpnII	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
Eam1104I	CTCTTC	2 cut(s)	560, 721
EarI	CTCTTC	2 cut(s)	560, 721
Ecl136II	GAGCTC	2 cut(s)	307, 506
Eco24I	GRGCYC	2 cut(s)	309, 508
Eco53kI	GAGCTC	2 cut(s)	307, 506
Eco57I	CTGAAG	2 cut(s)	215, 660
Eco91I	GGTNACC	1 cut(s)	757
EcoICRI	GAGCTC	2 cut(s)	307, 506
EcoO65I	GGTNACC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	2 cut(s)	309, 508
Esp3I	CGTCTC	2 cut(s)	91, 141
FaeI	CATG	5 cut(s)	443, 752, 766, 829, 868
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	5 cut(s)	439, 748, 762, 825, 864
FauI	CCCGC	1 cut(s)	182
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	2 cut(s)	792, 834
FokI	GGATG	3 cut(s)	380, 576, 919
FriOI	GRGCYC	2 cut(s)	309, 508
Fsp4HI	GCNGC	2 cut(s)	792, 834
FspBI	CTAG	2 cut(s)	621, 903
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	792, 834
GsuI	CTGGAG	2 cut(s)	431, 858
HaeIII	GGCC	2 cut(s)	7, 548
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	3 cut(s)	191, 447, 533
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	5 cut(s)	443, 752, 766, 829, 868
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	5 cut(s)	171, 311, 358, 552, 949
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	3 cut(s)	400, 571, 769
Hpy166II	GTNNAC	3 cut(s)	485, 746, 768
Hpy188I	TCNGA	5 cut(s)	354, 503, 523, 800, 917
Hpy188III	TCNNGA	6 cut(s)	258, 284, 440, 561, 826, 908
Hpy8I	GTNNAC	3 cut(s)	485, 746, 768
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	6 cut(s)	100, 105, 117, 190, 610, 670
HpyCH4III	ACNGT	2 cut(s)	489, 818
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	518, 659, 665, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 524, 800
HpyF3I	CTNAG	4 cut(s)	412, 690, 705, 914
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	5 cut(s)	443, 752, 766, 829, 868
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
Lsp1109I	GCAGC	2 cut(s)	778, 820
LweI	GCATC	2 cut(s)	527, 554
MaeI	CTAG	2 cut(s)	621, 903
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	6 cut(s)	153, 165, 351, 729, 912, 919
MboI	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
MboII	GAAGA	7 cut(s)	264, 272, 547, 708, 915, 918, 958
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	2 cut(s)	309, 508
MluCI	AATT	4 cut(s)	14, 57, 453, 891
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	164, 217
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	5 cut(s)	12, 45, 60, 627, 810
MslI	CAYNNNNRTG	2 cut(s)	863, 869
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	4 cut(s)	661, 794, 835, 843
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	199, 524, 800
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
NlaIII	CATG	5 cut(s)	443, 752, 766, 829, 868
NmeAIII	GCCGAG	2 cut(s)	353, 714
NmuCI	GTSAC	1 cut(s)	757
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	2 cut(s)	752, 868
PaeI	GCATGC	1 cut(s)	868
PagI	TCATGA	2 cut(s)	439, 825
PciI	ACATGT	1 cut(s)	748
PctI	GAATGC	4 cut(s)	661, 794, 835, 843
PfeI	GAWTC	4 cut(s)	171, 311, 358, 949
PkrI	GCNGC	2 cut(s)	793, 835
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PscI	ACATGT	1 cut(s)	748
PsiI	TTATAA	1 cut(s)	56
Psp124BI	GAGCTC	2 cut(s)	309, 508
Psp6I	CCWGG	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	6, 547
PsuI	RGATCY	1 cut(s)	910
PvuI	CGATCG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	486, 491
RsaNI	GTAC	2 cut(s)	485, 490
RseI	CAYNNNNRTG	2 cut(s)	863, 869
SacI	GAGCTC	2 cut(s)	309, 508
SaqAI	TTAA	5 cut(s)	12, 45, 60, 627, 810
SatI	GCNGC	2 cut(s)	792, 834
Sau3AI	GATC	6 cut(s)	151, 163, 349, 727, 910, 917
Sau96I	GGNCC	2 cut(s)	6, 547
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	309, 508
SfaNI	GCATC	2 cut(s)	527, 554
SmiMI	CAYNNNNRTG	2 cut(s)	863, 869
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SphI	GCATGC	1 cut(s)	868
Sse9I	AATT	4 cut(s)	14, 57, 453, 891
SsiI	CCGC	2 cut(s)	189, 539
SspMI	CTAG	2 cut(s)	621, 903
SstI	GAGCTC	2 cut(s)	309, 508
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	489, 818
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	162, 309, 380, 530
TasI	AATT	4 cut(s)	14, 57, 453, 891
TfiI	GAWTC	4 cut(s)	171, 311, 358, 949
Tru1I	TTAA	5 cut(s)	12, 45, 60, 627, 810
Tru9I	TTAA	5 cut(s)	12, 45, 60, 627, 810
TscAI	CASTG	3 cut(s)	352, 487, 709
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	2 cut(s)	791, 833
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	6 cut(s)	70, 87, 371, 456, 842, 877
TspRI	CASTG	3 cut(s)	352, 487, 709
Vha464I	CTTAAG	1 cut(s)	626
XceI	RCATGY	2 cut(s)	752, 868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
XspI	CTAG	2 cut(s)	621, 903
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.