Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Reverse (-)

3716176 .. 3720509

Gene Structure 4334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G032500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGCAGTGACCACACAAACCCACCGGGACTGGTCGTCTCCACCACCGACCCCATCCTCGCATTTCTCACCTCAGCCTCCACAGACCCACACCTCTCTCAGGAACTCCAGCAAATCGCTTCCAATCTCTCCTCCAAACCCAATGTTCCGTACAAGTCTCTCCGAGCTCTCTGGCTCGCGTCCAATGCCTCCACCCGGCCCCAATTGGTCCAACTCTTCTCAGGATCCGAGTTCGTGCTCACCAGCCCCAAACCCAGAGAAAAGAGTGAGGAGTTGAAGGCCAGACTTCAGAAGCTGGCTGAAATTCTGGAGAGGAATGCGTATGCAGAACTTGTGAAGGATATTACACCTAAGAAAGAGACCAATGAGCCTTTCTCATCTTACAAGGATCAATTGGGCTTTGGTTTACATGTTGTGGTGACTATGTTTACCGGCTATTTGGTAGGATATGCTGCATTCAGAGCCTTGTTTAACCACAGTCCCGTGATGAATGCTGCTGGAGGCATTCTTGGATTGGTAGTTAGCATGCTCGTAGAAACACTTATTTTCATAATTAGAAGTTCTGGTCAAGATCTTAGATCATCTTCTTCCACACCCAAGCTAAAGAAGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

206

Amino Acids

22.45

Weight (kDa)

9.3

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AclWI	GGATC	3 cut(s)	219, 232, 396
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	100, 195
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	35
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	3 cut(s)	167, 295, 601
AluI	AGCT	3 cut(s)	167, 295, 601
Alw21I	GWGCWC	2 cut(s)	169, 240
Alw26I	GTCTC	3 cut(s)	43, 162, 353
AlwI	GGATC	3 cut(s)	219, 232, 396
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	197, 279
ApeKI	GCWGC	2 cut(s)	452, 494
ApoI	RAATTY	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	198, 208
AsuC2I	CCSGG	2 cut(s)	27, 196
AsuHPI	GGTGA	3 cut(s)	61, 232, 430
AvaII	GGWCC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	169, 240
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	439, 481
BccI	CCATC	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	27, 196
BcoDI	GTCTC	3 cut(s)	43, 162, 353
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	2 cut(s)	453, 495
BlsI	GCNGC	2 cut(s)	454, 496
Bme1390I	CCNGG	2 cut(s)	27, 196
Bme18I	GGWCC	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	198, 208
BmiI	GGNNCC	2 cut(s)	200, 226
BmrFI	CCNGG	2 cut(s)	27, 196
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	3 cut(s)	92, 329, 519
Bpu10I	CCTNAGC	1 cut(s)	73
BpuMI	CCSGG	2 cut(s)	27, 196
BsaI	GGTCTC	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 195
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	100, 195
BseMII	CTCAG	3 cut(s)	87, 113, 234
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	121, 284
BseXI	GCAGC	2 cut(s)	439, 481
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	199, 281
BsiHKAI	GWGCWC	2 cut(s)	169, 240
BsiSI	CCGG	3 cut(s)	26, 196, 432
BslFI	GGGAC	2 cut(s)	42, 465
BslI	CCNNNNNNNGG	2 cut(s)	100, 195
BsmAI	GTCTC	3 cut(s)	43, 162, 353
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	2 cut(s)	42, 465
BsmI	GAATGC	4 cut(s)	322, 455, 496, 504
BsnI	GGCC	2 cut(s)	199, 281
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	169, 240
Bsp143I	GATC	4 cut(s)	224, 388, 571, 578
BspANI	GGCC	2 cut(s)	199, 281
BspCNI	CTCAG	3 cut(s)	86, 112, 233
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	200, 226
BspPI	GGATC	3 cut(s)	219, 232, 396
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	431
BssMI	GATC	4 cut(s)	224, 388, 571, 578
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	177, 297, 527
BstDEI	CTNAG	5 cut(s)	73, 99, 220, 351, 575
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	227, 391, 574, 581
BstMAI	GTCTC	3 cut(s)	43, 162, 353
BstMBI	GATC	4 cut(s)	224, 388, 571, 578
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 461
BstNSI	RCATGY	2 cut(s)	413, 529
BstSCI	CCNGG	2 cut(s)	25, 194
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	439, 481
BstX2I	RGATCY	2 cut(s)	224, 571
BstYI	RGATCY	2 cut(s)	224, 571
BsuRI	GGCC	2 cut(s)	199, 281
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	3 cut(s)	177, 297, 527
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	198, 208
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	410, 526
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	5 cut(s)	73, 99, 220, 351, 575
DpnI	GATC	4 cut(s)	226, 390, 573, 580
DpnII	GATC	4 cut(s)	224, 388, 571, 578
DriI	GACNNNNNGTC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	221
Eam1105I	GACNNNNNGTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	413, 529
FaiI	YATR	6 cut(s)	324, 411, 425, 450, 527, 551
FaqI	GGGAC	2 cut(s)	42, 465
FatI	CATG	2 cut(s)	409, 525
Fnu4HI	GCNGC	2 cut(s)	453, 495
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	453, 495
GluI	GCNGC	2 cut(s)	453, 495
GsuI	CTGGAG	3 cut(s)	92, 329, 519
HaeIII	GGCC	2 cut(s)	199, 281
HapII	CCGG	3 cut(s)	26, 196, 432
HgaI	GACGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	413, 529
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	3 cut(s)	26, 196, 432
HphI	GGTGA	3 cut(s)	61, 232, 430
Hpy166II	GTNNAC	2 cut(s)	407, 429
Hpy188I	TCNGA	4 cut(s)	164, 229, 291, 461
Hpy188III	TCNNGA	4 cut(s)	101, 222, 308, 569
Hpy8I	GTNNAC	2 cut(s)	407, 429
HpyAV	CCTTC	2 cut(s)	271, 331
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	326, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 461
HpyF3I	CTNAG	5 cut(s)	73, 99, 220, 351, 575
Hsp92II	CATG	2 cut(s)	413, 529
Kzo9I	GATC	4 cut(s)	224, 388, 571, 578
Lsp1109I	GCAGC	2 cut(s)	439, 481
MaeIII	GTNAC	2 cut(s)	8, 418
MalI	GATC	4 cut(s)	226, 390, 573, 580
MboI	GATC	4 cut(s)	224, 388, 571, 578
MboII	GAAGA	3 cut(s)	208, 576, 579
MfeI	CAATTG	2 cut(s)	203, 392
MflI	RGATCY	2 cut(s)	224, 571
MhlI	GDGCHC	2 cut(s)	169, 240
MluCI	AATT	4 cut(s)	203, 303, 392, 552
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	9 cut(s)	68, 82, 88, 104, 142, 199, 262, 306, 494
MseI	TTAA	1 cut(s)	471
MspI	CCGG	3 cut(s)	26, 196, 432
MspR9I	CCNGG	2 cut(s)	27, 196
MunI	CAATTG	2 cut(s)	203, 392
Mva1269I	GAATGC	4 cut(s)	322, 455, 496, 504
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	185, 461
NciI	CCSGG	2 cut(s)	27, 196
NdeII	GATC	4 cut(s)	224, 388, 571, 578
NlaIII	CATG	2 cut(s)	413, 529
NlaIV	GGNNCC	2 cut(s)	200, 226
NmuCI	GTSAC	2 cut(s)	8, 418
NspI	RCATGY	2 cut(s)	413, 529
PaeI	GCATGC	1 cut(s)	529
PciI	ACATGT	1 cut(s)	409
PctI	GAATGC	4 cut(s)	322, 455, 496, 504
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	2 cut(s)	454, 496
PscI	ACATGT	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	200, 226
PspPI	GGNCC	2 cut(s)	198, 208
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	224, 571
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	453, 495
Sau3AI	GATC	4 cut(s)	224, 388, 571, 578
Sau96I	GGNCC	2 cut(s)	198, 208
ScrFI	CCNGG	2 cut(s)	27, 196
SduI	GDGCHC	2 cut(s)	169, 240
SetI	ASST	6 cut(s)	74, 96, 169, 297, 352, 603
SinI	GGWCC	1 cut(s)	208
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	4 cut(s)	203, 303, 392, 552
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	25, 194
TaaI	ACNGT	1 cut(s)	479
TasI	AATT	4 cut(s)	203, 303, 392, 552
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	8, 418
TseI	GCWGC	2 cut(s)	452, 494
Tsp45I	GTSAC	2 cut(s)	8, 418
TspDTI	ATGAA	2 cut(s)	503, 538
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	2 cut(s)	413, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.