Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Forward (+)

13807777 .. 13811880

Gene Structure 4104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGCCGCGACTCTCCGGCACCGGCCACCGGACCCGGTCTGGTGATCTCCACCACGGAGCCCATCCTCTCATTCCTAATCTCCGCCTCCACCGACCCACACCTCTCCAAAGAGCTCCAGCTAACCGCCTCGAAGCTCTCGTCCAAATCCAACGTCCCCTACCGCGCCATCCGCGCCCTCTGGGTCGCTTCCCGCGCCTCCACCCGCCCCCAACTCGTCCACCTCTTCTCCGGCTCCGGCTTCGTCTTCACCAGCCCCCCTCCGAGAGAAAAGAGTGAGGAGCTGAAGACGAGGCTGAAGAAGCTGGCGGAGATGTCGGAGAGGAGTGCATATGCAGAGCTGGTGAAGGATATAACCCCTCGGAAGGACGCTGCGGAGCCTTTCTCTTCTTACAAGGATCAATTGGGCTTTGGTTTACATGTAGTGGTGACCATGTTTACCGGCTATTTGGTTGGATATGCTGCATTCAGAGCATTGTTTAGCCACAGTCCTGTGATGAATGCTGCTGGAGGCATTCTTGGGTTGGTCATTGGCATGCTCGTAGAAACACTTATGTTCATAATTCAAGCTTCCCGCTACGATCTTAAATCAACATCAGCTTCTTCCACATCCAGGCTAAAGAAGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

211

Amino Acids

22.83

Weight (kDa)

9.76

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	4 cut(s)	9, 165, 174, 195
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	305, 317
AfiI	CCNNNNNNNGG	3 cut(s)	29, 364, 612
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	611
AluBI	AGCT	8 cut(s)	115, 121, 136, 283, 304, 340, 569, 599
AluI	AGCT	8 cut(s)	115, 121, 136, 283, 304, 340, 569, 599
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	371, 461, 503
ArsI	GACNNNNNNTTYG	4 cut(s)	125, 138, 157, 170
AspLEI	GCGC	3 cut(s)	167, 176, 197
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	4 cut(s)	55, 241, 355, 439
AvaII	GGWCC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	63, 117
BbsI	GAAGAC	2 cut(s)	238, 293
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	358, 448, 490
BccI	CCATC	2 cut(s)	71, 176
BciT130I	CCWGG	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	36
BisI	GCNGC	4 cut(s)	7, 372, 462, 504
BlsI	GCNGC	4 cut(s)	8, 373, 463, 505
Bme1390I	CCNGG	2 cut(s)	36, 613
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	5 cut(s)	21, 34, 60, 235, 378
BmrFI	CCNGG	2 cut(s)	36, 613
BpiI	GAAGAC	2 cut(s)	238, 293
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	2 cut(s)	101, 528
BpuMI	CCSGG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	54, 359
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 364, 612
Bse118I	RCCGGY	2 cut(s)	22, 440
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	54, 359
BseGI	GGATG	3 cut(s)	63, 168, 608
BseLI	CCNNNNNNNGG	3 cut(s)	29, 364, 612
BseRI	GAGGAG	2 cut(s)	293, 337
BseXI	GCAGC	3 cut(s)	358, 448, 490
Bsh1236I	CGCG	4 cut(s)	9, 165, 174, 195
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	7 cut(s)	17, 23, 30, 36, 231, 237, 441
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	29, 364, 612
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	3 cut(s)	464, 505, 513
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	63, 117
Bsp143I	GATC	4 cut(s)	45, 397, 580, 625
BspANI	GGCC	1 cut(s)	26
BspFNI	CGCG	4 cut(s)	9, 165, 174, 195
BspLI	GGNNCC	5 cut(s)	21, 34, 60, 235, 378
BspPI	GGATC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	19
BsrFI	RCCGGY	2 cut(s)	22, 440
BssAI	RCCGGY	2 cut(s)	22, 440
BssECI	CCNNGG	2 cut(s)	54, 359
BssMI	GATC	4 cut(s)	45, 397, 580, 625
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	2 cut(s)	230, 391
BstC8I	GCNNGC	2 cut(s)	306, 536
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	63, 168, 608
BstFNI	CGCG	4 cut(s)	9, 165, 174, 195
BstHHI	GCGC	3 cut(s)	167, 176, 197
BstKTI	GATC	4 cut(s)	48, 400, 583, 628
BstMBI	GATC	4 cut(s)	45, 397, 580, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 173, 194, 301, 470
BstNI	CCWGG	1 cut(s)	613
BstNSI	RCATGY	2 cut(s)	422, 538
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	34, 611
BstUI	CGCG	4 cut(s)	9, 165, 174, 195
BstV1I	GCAGC	3 cut(s)	358, 448, 490
BstV2I	GAAGAC	2 cut(s)	238, 293
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	63, 168, 608
Cac8I	GCNNGC	2 cut(s)	306, 536
CfoI	GCGC	3 cut(s)	167, 176, 197
Cfr10I	RCCGGY	2 cut(s)	22, 440
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	377
CviAII	CATG	3 cut(s)	419, 433, 535
DpnI	GATC	4 cut(s)	47, 399, 582, 627
DpnII	GATC	4 cut(s)	45, 397, 580, 625
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	230, 391
EarI	CTCTTC	2 cut(s)	230, 391
EciI	GGCGGA	2 cut(s)	73, 323
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	2 cut(s)	63, 117
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	305, 317
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	611
EcoT38I	GRGCYC	2 cut(s)	63, 117
FaeI	CATG	3 cut(s)	422, 436, 538
FaiI	YATR	9 cut(s)	331, 333, 353, 420, 434, 459, 536, 554, 560
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	418, 432, 534
FauI	CCCGC	3 cut(s)	200, 212, 581
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	7, 372, 462, 504
FokI	GGATG	3 cut(s)	50, 155, 595
FriOI	GRGCYC	2 cut(s)	63, 117
Fsp4HI	GCNGC	4 cut(s)	7, 372, 462, 504
GlaI	GCGC	3 cut(s)	166, 175, 196
GluI	GCNGC	4 cut(s)	7, 372, 462, 504
GsuI	CTGGAG	2 cut(s)	101, 528
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	7 cut(s)	17, 23, 30, 36, 231, 237, 441
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	3 cut(s)	167, 176, 197
Hin1II	CATG	3 cut(s)	422, 436, 538
Hin6I	GCGC	3 cut(s)	165, 174, 195
HinP1I	GCGC	3 cut(s)	165, 174, 195
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	7 cut(s)	17, 23, 30, 36, 231, 237, 441
HphI	GGTGA	4 cut(s)	55, 241, 355, 439
Hpy166II	GTNNAC	3 cut(s)	220, 416, 438
Hpy188I	TCNGA	4 cut(s)	264, 319, 363, 470
Hpy8I	GTNNAC	3 cut(s)	220, 416, 438
HpyAV	CCTTC	3 cut(s)	340, 358, 616
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	329, 335, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 173, 194, 301, 470
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	422, 436, 538
HspAI	GCGC	3 cut(s)	165, 174, 195
Kzo9I	GATC	4 cut(s)	45, 397, 580, 625
LmnI	GCTCC	5 cut(s)	58, 120, 239, 280, 376
Lsp1109I	GCAGC	3 cut(s)	358, 448, 490
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	4 cut(s)	47, 399, 582, 627
MboI	GATC	4 cut(s)	45, 397, 580, 625
MboII	GAAGA	6 cut(s)	217, 238, 298, 310, 378, 594
MfeI	CAATTG	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	63, 117
MluCI	AATT	2 cut(s)	401, 561
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	174, 297, 433
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	7 cut(s)	17, 23, 30, 36, 231, 237, 441
MspR9I	CCNGG	2 cut(s)	36, 613
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	3 cut(s)	464, 505, 513
MvaI	CCWGG	1 cut(s)	613
MvnI	CGCG	4 cut(s)	9, 165, 174, 195
MwoI	GCNNNNNNNGC	5 cut(s)	171, 173, 194, 301, 470
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	4 cut(s)	45, 397, 580, 625
NlaIII	CATG	3 cut(s)	422, 436, 538
NlaIV	GGNNCC	5 cut(s)	21, 34, 60, 235, 378
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	2 cut(s)	422, 538
PaeI	GCATGC	1 cut(s)	538
PciI	ACATGT	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PctI	GAATGC	3 cut(s)	464, 505, 513
PflFI	GACNNNGTC	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	8, 373, 463, 505
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PscI	ACATGT	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	611
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	5 cut(s)	21, 34, 60, 235, 378
PspPI	GGNCC	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	4 cut(s)	7, 372, 462, 504
Sau3AI	GATC	4 cut(s)	45, 397, 580, 625
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	2 cut(s)	36, 613
SduI	GDGCHC	2 cut(s)	63, 117
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	538
Sse9I	AATT	2 cut(s)	401, 561
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	34, 611
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	401, 561
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	371, 461, 503
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	512, 547
TspGWI	ACGGA	1 cut(s)	71
Tth111I	GACNNNGTC	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	32
XceI	RCATGY	2 cut(s)	422, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.