Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Forward (+)

27827051 .. 27831739

Gene Structure 4689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGCAGAGACTCTCCGGCACCGGCAACTGGACCCGGACCCGGACCCGGACTGGTGATATCGACGACGCCACCCATCCTCTCCTTCCTCGTCTCCGCCTCCACCGACCCACACCTCTCCAAGGACCTCCAGCAAACCGCCTCCAAGCTCTCCTCCAAATCCAATGTCCCCTACCGGGCCATCCGCGCCCTCTGGGTCGCTTCCCGGGCCTCCACCCGGCCCCAATTGGTCAAGCTCTTCTCCGGTTCCGGGTTCGTCTTCACCAGCCCCAAGCCCAGAGAGAAGAGTGAGGAGCTGAAGGCGAGGCTGAAGGAGCTGGCGGAGATGTCAGAGAGGAATGCATATGCAGAGCTTGTGAAGGATATAACGCCCCGGAAAGATAGCGCCCCGGAGCCGTTCTCGTCTTACAAGGATCAATTGGGCTTTGGTTTACATGTTGTGGTGACCATGTTTACCGGCTATTTGGTTGGATATGCTGCATTCAGAGCATTGTTTAGCCACAGTCCTGTGATGAATGCTGCTGGAGGCATTCTTGGATTGGTCATTGGCATGCTCGTCGAAACGCTTATTTTCATAATTCAAGCTTCCCGCTACGATCTTAAATCATCCTCTTCCACATCCAAGCTAAAGAAGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

213

Amino Acids

23.01

Weight (kDa)

9.78

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	186
AciI	CCGC	5 cut(s)	96, 138, 184, 320, 589
AclWI	GGATC	1 cut(s)	420
AcuI	CTGAAG	2 cut(s)	317, 329
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	7 cut(s)	29, 41, 47, 121, 175, 216, 249
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	581
AluBI	AGCT	7 cut(s)	148, 235, 295, 316, 352, 584, 625
AluI	AGCT	7 cut(s)	148, 235, 295, 316, 352, 584, 625
Alw26I	GTCTC	2 cut(s)	3, 97
AlwI	GGATC	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	3 cut(s)	177, 207, 218
ApeKI	GCWGC	2 cut(s)	476, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspLEI	GCGC	2 cut(s)	188, 386
AspS9I	GGNCC	7 cut(s)	32, 38, 44, 124, 177, 207, 219
AsuHPI	GGTGA	3 cut(s)	67, 253, 454
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	4 cut(s)	32, 38, 44, 124
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	463, 505
BccI	CCATC	2 cut(s)	83, 188
BceAI	ACGGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BcoDI	GTCTC	2 cut(s)	3, 97
BfoI	RGCGCY	1 cut(s)	387
BisI	GCNGC	2 cut(s)	477, 519
BlsI	GCNGC	2 cut(s)	478, 520
Bme18I	GGWCC	4 cut(s)	32, 38, 44, 124
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	7 cut(s)	32, 38, 44, 124, 177, 207, 219
BmiI	GGNNCC	7 cut(s)	21, 34, 40, 46, 221, 247, 393
BpiI	GAAGAC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	2 cut(s)	113, 543
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	4 cut(s)	120, 204, 371, 387
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 41, 47, 121, 175, 216, 249
Bse118I	RCCGGY	2 cut(s)	22, 455
Bse1I	ACTGG	2 cut(s)	34, 57
BseDI	CCNNGG	4 cut(s)	120, 204, 371, 387
BseGI	GGATG	4 cut(s)	75, 180, 605, 617
BseLI	CCNNNNNNNGG	7 cut(s)	29, 41, 47, 121, 175, 216, 249
BseNI	ACTGG	2 cut(s)	34, 57
BseRI	GAGGAG	2 cut(s)	142, 305
BseXI	GCAGC	2 cut(s)	463, 505
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	179, 209, 220
BshNI	GGYRCC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	7 cut(s)	29, 41, 47, 121, 175, 216, 249
BsmAI	GTCTC	2 cut(s)	3, 97
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	4 cut(s)	343, 479, 520, 528
BsnI	GGCC	3 cut(s)	179, 209, 220
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	412, 595, 634
BspACI	CCGC	5 cut(s)	96, 138, 184, 320, 589
BspANI	GGCC	3 cut(s)	179, 209, 220
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	7 cut(s)	21, 34, 40, 46, 221, 247, 393
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	19
BsrFI	RCCGGY	2 cut(s)	22, 455
BsrI	ACTGG	2 cut(s)	34, 57
BssAI	RCCGGY	2 cut(s)	22, 455
BssECI	CCNNGG	4 cut(s)	120, 204, 371, 387
BssMI	GATC	3 cut(s)	412, 595, 634
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	3 cut(s)	242, 278, 616
BstACI	GRCGYC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	318, 551
BstEII	GGTNACC	1 cut(s)	442
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	75, 180, 605, 617
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	188, 386
BstKTI	GATC	3 cut(s)	415, 598, 637
BstMAI	GTCTC	2 cut(s)	3, 97
BstMBI	GATC	3 cut(s)	412, 595, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 206, 313, 485
BstNSI	RCATGY	2 cut(s)	437, 553
BstPI	GGTNACC	1 cut(s)	442
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	463, 505
BstV2I	GAAGAC	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	179, 209, 220
BtsCI	GGATG	4 cut(s)	75, 180, 605, 617
Cac8I	GCNNGC	2 cut(s)	318, 551
CfoI	GCGC	2 cut(s)	188, 386
Cfr10I	RCCGGY	2 cut(s)	22, 455
Cfr13I	GGNCC	7 cut(s)	32, 38, 44, 124, 177, 207, 219
Cfr9I	CCCGGG	1 cut(s)	204
CseI	GACGC	1 cut(s)	76
CviAII	CATG	3 cut(s)	434, 448, 550
DpnI	GATC	3 cut(s)	414, 597, 636
DpnII	GATC	3 cut(s)	412, 595, 634
Eam1104I	CTCTTC	3 cut(s)	242, 278, 616
EarI	CTCTTC	3 cut(s)	242, 278, 616
EciI	GGCGGA	2 cut(s)	85, 335
Eco130I	CCWWGG	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	4 cut(s)	32, 38, 44, 124
Eco57I	CTGAAG	2 cut(s)	317, 329
Eco88I	CYCGRG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	437, 451, 553
FaiI	YATR	8 cut(s)	343, 345, 365, 435, 449, 474, 551, 575
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	433, 447, 549
FauI	CCCGC	1 cut(s)	596
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	477, 519
FokI	GGATG	4 cut(s)	62, 167, 592, 604
Fsp4HI	GCNGC	2 cut(s)	477, 519
GlaI	GCGC	2 cut(s)	187, 385
GluI	GCNGC	2 cut(s)	477, 519
GsuI	CTGGAG	2 cut(s)	113, 543
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	179, 209, 220
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	188, 386
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	437, 451, 553
Hin6I	GCGC	2 cut(s)	186, 384
HinP1I	GCGC	2 cut(s)	186, 384
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	3 cut(s)	67, 253, 454
Hpy166II	GTNNAC	2 cut(s)	431, 453
Hpy188I	TCNGA	2 cut(s)	331, 485
Hpy8I	GTNNAC	2 cut(s)	431, 453
Hpy99I	CGWCG	3 cut(s)	67, 70, 560
HpyAV	CCTTC	5 cut(s)	94, 292, 304, 352, 625
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	341, 347, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 206, 313, 485
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	437, 451, 553
HspAI	GCGC	2 cut(s)	186, 384
Kzo9I	GATC	3 cut(s)	412, 595, 634
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	292, 313, 391
Lsp1109I	GCAGC	2 cut(s)	463, 505
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	414, 597, 636
MboI	GATC	3 cut(s)	412, 595, 634
MboII	GAAGA	4 cut(s)	229, 250, 295, 603
MfeI	CAATTG	2 cut(s)	224, 416
MluCI	AATT	3 cut(s)	224, 416, 576
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	448
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	548
MunI	CAATTG	2 cut(s)	224, 416
Mva1269I	GAATGC	4 cut(s)	343, 479, 520, 528
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	185, 206, 313, 485
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	3 cut(s)	412, 595, 634
NlaIII	CATG	3 cut(s)	437, 451, 553
NlaIV	GGNNCC	7 cut(s)	21, 34, 40, 46, 221, 247, 393
NmuCI	GTSAC	1 cut(s)	442
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	2 cut(s)	437, 553
PaeI	GCATGC	1 cut(s)	553
PciI	ACATGT	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	242
PctI	GAATGC	4 cut(s)	343, 479, 520, 528
PkrI	GCNGC	2 cut(s)	478, 520
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	124
PscI	ACATGT	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	442
PspN4I	GGNNCC	7 cut(s)	21, 34, 40, 46, 221, 247, 393
PspPI	GGNCC	7 cut(s)	32, 38, 44, 124, 177, 207, 219
PspPPI	RGGWCCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	2 cut(s)	477, 519
Sau3AI	GATC	3 cut(s)	412, 595, 634
Sau96I	GGNCC	7 cut(s)	32, 38, 44, 124, 177, 207, 219
SchI	GAGTC	1 cut(s)	5
SetI	ASST	9 cut(s)	117, 129, 150, 237, 297, 318, 354, 586, 627
SinI	GGWCC	4 cut(s)	32, 38, 44, 124
SmaI	CCCGGG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	553
Sse9I	AATT	3 cut(s)	224, 416, 576
SsiI	CCGC	5 cut(s)	96, 138, 184, 320, 589
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	62, 558
TasI	AATT	3 cut(s)	224, 416, 576
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	476, 518
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	527, 562
TspMI	CCCGGG	1 cut(s)	204
VpaK11BI	GGWCC	4 cut(s)	32, 38, 44, 124
XagI	CCTNNNNNAGG	1 cut(s)	119
XceI	RCATGY	2 cut(s)	437, 553
XmaI	CCCGGG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.