Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Forward (+)

25321514 .. 25327919

Gene Structure 6406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGCAGAGACTCTCCGGCACCGGCAACCGGACCCGGACCCGGACTGGTGATATCGACCACGGCACCCATCCTCTCCTTCCTCGTCTCCGCCTCCACCGACCCACACCTCTCCAAGGACCTCCAGCAAACCGCCTCCAAGCTCTCCTCCAAATCCAATGTCCCCTACCGGGCCATCCGCGCCCTCTGGGTCGCGTCCCGGGCCTCCACCCGGCCCCAATTGGTCAAGCTCTTCTCCGGTTCCGGGTTCGTCTTCACCAGCCCCAAGCCCAGAGAGAAGAGTGAGGAGCTGAAGGCGAGGCTGAAGGAGCTGGCGGAGATATCAGAGAGGAATGCATATGCAGAGCTTGTGAAGGATATAACGCCTCGGAAAGATAGCGCCCCGGAGCCCTTCTCGTCTTACAAGGATCAATTGGGCTTTGGTTTACATGTTGTGGTGACCATGTTTACCGGCTATTTGGTTGGATATGCTGCATTCAGAGCATTGTTTAGCCACAGTCCTGTGATGAATGCTGCTGGAGGCATTCTTGGATTGGTCATTGGCATGCTCGTGGAAACGCTTATTTTCATAATTCAAGCTTCCCGCTACGATCTTAAATCATCCTCTTCCACATCCAAGCTAAAGAAGGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

211

Amino Acids

22.81

Weight (kDa)

9.78

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 64
AccII	CGCG	2 cut(s)	180, 194
AciI	CCGC	5 cut(s)	90, 132, 178, 314, 583
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	311, 323
AfiI	CCNNNNNNNGG	6 cut(s)	29, 41, 115, 169, 210, 243
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	575
AluBI	AGCT	7 cut(s)	142, 229, 289, 310, 346, 578, 619
AluI	AGCT	7 cut(s)	142, 229, 289, 310, 346, 578, 619
Alw26I	GTCTC	2 cut(s)	3, 91
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	3 cut(s)	171, 201, 212
ApeKI	GCWGC	2 cut(s)	470, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	2 cut(s)	182, 380
AspS9I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
AsuC2I	CCSGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
AsuHPI	GGTGA	3 cut(s)	61, 247, 448
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	3 cut(s)	32, 38, 118
BanI	GGYRCC	2 cut(s)	19, 64
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	457, 499
BccI	CCATC	2 cut(s)	77, 182
BceAI	ACGGC	1 cut(s)	78
BcnI	CCSGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
BcoDI	GTCTC	2 cut(s)	3, 91
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	2 cut(s)	471, 513
BlsI	GCNGC	2 cut(s)	472, 514
Bme1390I	CCNGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
Bme18I	GGWCC	3 cut(s)	32, 38, 118
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
BmiI	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
BmrFI	CCNGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
BpiI	GAAGAC	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	2 cut(s)	107, 537
BpuMI	CCSGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
BsaJI	CCNNGG	5 cut(s)	60, 114, 198, 365, 381
BsaWI	WCCGGW	2 cut(s)	29, 236
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 41, 115, 169, 210, 243
Bse118I	RCCGGY	2 cut(s)	22, 449
Bse1I	ACTGG	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	60, 114, 198, 365, 381
BseGI	GGATG	4 cut(s)	69, 174, 599, 611
BseLI	CCNNNNNNNGG	6 cut(s)	29, 41, 115, 169, 210, 243
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	136, 299
BseXI	GCAGC	2 cut(s)	457, 499
Bsh1236I	CGCG	2 cut(s)	180, 194
BshFI	GGCC	3 cut(s)	173, 203, 214
BshNI	GGYRCC	2 cut(s)	19, 64
BsiHKCI	CYCGRG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	146, 181
BslI	CCNNNNNNNGG	6 cut(s)	29, 41, 115, 169, 210, 243
BsmAI	GTCTC	2 cut(s)	3, 91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	146, 181
BsmI	GAATGC	4 cut(s)	337, 473, 514, 522
BsnI	GGCC	3 cut(s)	173, 203, 214
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	406, 589, 628
BspACI	CCGC	5 cut(s)	90, 132, 178, 314, 583
BspANI	GGCC	3 cut(s)	173, 203, 214
BspFNI	CGCG	2 cut(s)	180, 194
BspLI	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
BspPI	GGATC	1 cut(s)	414
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	19, 64
BsrFI	RCCGGY	2 cut(s)	22, 449
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	2 cut(s)	22, 449
BssECI	CCNNGG	5 cut(s)	60, 114, 198, 365, 381
BssMI	GATC	3 cut(s)	406, 589, 628
BssSI	CACGAG	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	3 cut(s)	236, 272, 610
BstC8I	GCNNGC	2 cut(s)	312, 545
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	69, 174, 599, 611
BstFNI	CGCG	2 cut(s)	180, 194
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	182, 380
BstKTI	GATC	3 cut(s)	409, 592, 631
BstMAI	GTCTC	2 cut(s)	3, 91
BstMBI	GATC	3 cut(s)	406, 589, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 200, 307, 479
BstNSI	RCATGY	2 cut(s)	431, 547
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	8 cut(s)	34, 40, 168, 197, 198, 209, 242, 381
BstUI	CGCG	2 cut(s)	180, 194
BstV1I	GCAGC	2 cut(s)	457, 499
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	173, 203, 214
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	69, 174, 599, 611
Cac8I	GCNNGC	2 cut(s)	312, 545
CfoI	GCGC	2 cut(s)	182, 380
Cfr10I	RCCGGY	2 cut(s)	22, 449
Cfr13I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
Cfr9I	CCCGGG	1 cut(s)	198
CseI	GACGC	1 cut(s)	183
CviAII	CATG	3 cut(s)	428, 442, 544
DpnI	GATC	3 cut(s)	408, 591, 630
DpnII	GATC	3 cut(s)	406, 589, 628
Eam1104I	CTCTTC	3 cut(s)	236, 272, 610
EarI	CTCTTC	3 cut(s)	236, 272, 610
EciI	GGCGGA	2 cut(s)	79, 329
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	2 cut(s)	54, 321
Eco47I	GGWCC	3 cut(s)	32, 38, 118
Eco57I	CTGAAG	2 cut(s)	311, 323
Eco88I	CYCGRG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	436
EcoRV	GATATC	2 cut(s)	54, 321
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	431, 445, 547
FaiI	YATR	8 cut(s)	337, 339, 359, 429, 443, 468, 545, 569
FaqI	GGGAC	2 cut(s)	146, 181
FatI	CATG	3 cut(s)	427, 441, 543
FauI	CCCGC	1 cut(s)	590
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	471, 513
FokI	GGATG	4 cut(s)	56, 161, 586, 598
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	471, 513
GlaI	GCGC	2 cut(s)	181, 379
GluI	GCNGC	2 cut(s)	471, 513
GsuI	CTGGAG	2 cut(s)	107, 537
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	173, 203, 214
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	182, 380
Hin1II	CATG	3 cut(s)	431, 445, 547
Hin6I	GCGC	2 cut(s)	180, 378
HinP1I	GCGC	2 cut(s)	180, 378
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	3 cut(s)	61, 247, 448
Hpy166II	GTNNAC	2 cut(s)	425, 447
Hpy188I	TCNGA	3 cut(s)	325, 369, 479
Hpy8I	GTNNAC	2 cut(s)	425, 447
HpyAV	CCTTC	6 cut(s)	88, 286, 298, 346, 400, 619
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	3 cut(s)	335, 341, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 200, 307, 479
Hsp92II	CATG	3 cut(s)	431, 445, 547
HspAI	GCGC	2 cut(s)	180, 378
Kzo9I	GATC	3 cut(s)	406, 589, 628
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	3 cut(s)	286, 307, 385
Lsp1109I	GCAGC	2 cut(s)	457, 499
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	408, 591, 630
MboI	GATC	3 cut(s)	406, 589, 628
MboII	GAAGA	4 cut(s)	223, 244, 289, 597
MfeI	CAATTG	2 cut(s)	218, 410
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	218, 410, 570
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	542, 548
MspR9I	CCNGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
MunI	CAATTG	2 cut(s)	218, 410
Mva1269I	GAATGC	4 cut(s)	337, 473, 514, 522
MvnI	CGCG	2 cut(s)	180, 194
MwoI	GCNNNNNNNGC	4 cut(s)	179, 200, 307, 479
NciI	CCSGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	406, 589, 628
NlaIII	CATG	3 cut(s)	431, 445, 547
NlaIV	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	2 cut(s)	431, 547
PaeI	GCATGC	1 cut(s)	547
PciI	ACATGT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	236
PctI	GAATGC	4 cut(s)	337, 473, 514, 522
PkrI	GCNGC	2 cut(s)	472, 514
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	436
PspN4I	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
PspPI	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
PspPPI	RGGWCCY	1 cut(s)	118
RseI	CAYNNNNRTG	2 cut(s)	542, 548
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	2 cut(s)	471, 513
Sau3AI	GATC	3 cut(s)	406, 589, 628
Sau96I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	8 cut(s)	36, 42, 170, 199, 200, 211, 244, 383
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	9 cut(s)	111, 123, 144, 231, 291, 312, 348, 580, 621
SinI	GGWCC	3 cut(s)	32, 38, 118
SmaI	CCCGGG	1 cut(s)	200
SmiMI	CAYNNNNRTG	2 cut(s)	542, 548
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	3 cut(s)	218, 410, 570
SsiI	CCGC	5 cut(s)	90, 132, 178, 314, 583
StyD4I	CCNGG	8 cut(s)	34, 40, 168, 197, 198, 209, 242, 381
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	218, 410, 570
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	470, 512
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	521, 556
TspMI	CCCGGG	1 cut(s)	198
VpaK11BI	GGWCC	3 cut(s)	32, 38, 118
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	2 cut(s)	431, 547
XmaI	CCCGGG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.