Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003225

Physical Location & Seq

Genomic Coordinates Forward (+)

27414620 .. 27419728

Gene Structure 5109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCAGAGACTCTCCGGCACCGGCAACCGGACCCGGACCCGGACTGGTGATATCGACCACGGCACCCATCCTCTCCTTCCTCGTCTCCGCCTCCACCGACCCACACCTCTCCAAGGACCTCCAGCAAACCGCCTCCAAGCTCTCCTCCAAATCCAATGTCCCCTACCGGGCCATCCGCGCCCTCTGGGTCGCTTCCCGGGCCTCCACCCGGCCCCAATTCGTCAAGCTCTTCTCCGGTTCCGGATTCGTCTTCACCAGCCCCAAGCCCAGAGAGAAGAGTGAGGAGCTGAAGGCGAGGCTGAAGGAGCTGGCGGAGATATCAGAGAGGAATGCATATGCAGAGCTTGTGAAGGATATAACGCCTCGGAAAGATAGCGCCCCGGAGCCCTTCTCGTCTTACAAGGATCAATTGGGCTTTGGTATGCCTAACTCATGCATCATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vma12

Protein Analysis

149

Amino Acids

16.14

Weight (kDa)

9.63

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52980 AT5G52980
fragaria_vesca	FvH4_5g22440 FvH4_5g22440
malus_domestica	MD06G1036800.v1.1
prunus_persica	Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1 Prupe.5G032500_v2.0.a1
pyrus_communis	pycom06g03010
rosa_chinensis	RchiOBHm_Chr7g0210201 RchiOBHm_Chr7g0210231
rosa_laevigata	RLG00000003057
rosa_multiflora	Rmu_sc0005438.1_g000010 Rmu_sc0006908.1_g000007 Rmu_sc0019437.1_g000003
rosa_roxburghii	Rroxscaffold_3G00248540
rosa_rugosa	Rorug07G0119300 Rorug07G0119400 Rorug07G0119500 Rorug07G0119600 Rorug07G0119700 Rorug07G0119800
rosa_samantha	Rh1AG349500 Rh7AG252700 Rh7BG247800 Rh7CG269700 Rh7DG260300
rosa_wichuraiana	Rw1G031130 Rw7G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 64
AccII	CGCG	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	4 cut(s)	90, 132, 178, 314
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	311, 323
AfiI	CCNNNNNNNGG	5 cut(s)	29, 41, 115, 169, 210
AluBI	AGCT	5 cut(s)	142, 229, 289, 310, 346
AluI	AGCT	5 cut(s)	142, 229, 289, 310, 346
Alw26I	GTCTC	2 cut(s)	3, 91
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	3 cut(s)	171, 201, 212
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	2 cut(s)	182, 380
AspS9I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
AsuC2I	CCSGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
AsuHPI	GGTGA	2 cut(s)	61, 247
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	3 cut(s)	32, 38, 118
BanI	GGYRCC	2 cut(s)	19, 64
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	244
BccI	CCATC	2 cut(s)	77, 182
BceAI	ACGGC	1 cut(s)	78
BcnI	CCSGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
BcoDI	GTCTC	2 cut(s)	3, 91
BfoI	RGCGCY	1 cut(s)	381
Bme1390I	CCNGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
Bme18I	GGWCC	3 cut(s)	32, 38, 118
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
BmiI	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
BmrFI	CCNGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
BpiI	GAAGAC	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	107
BpuMI	CCSGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
BsaJI	CCNNGG	5 cut(s)	60, 114, 198, 365, 381
BsaWI	WCCGGW	3 cut(s)	29, 236, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 41, 115, 169, 210
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	242
BseDI	CCNNGG	5 cut(s)	60, 114, 198, 365, 381
BseGI	GGATG	2 cut(s)	69, 174
BseLI	CCNNNNNNNGG	5 cut(s)	29, 41, 115, 169, 210
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	136, 299
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	173, 203, 214
BshNI	GGYRCC	2 cut(s)	19, 64
BsiHKCI	CYCGRG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	5 cut(s)	29, 41, 115, 169, 210
BsmAI	GTCTC	2 cut(s)	3, 91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	173, 203, 214
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	4 cut(s)	90, 132, 178, 314
BspANI	GGCC	3 cut(s)	173, 203, 214
BspEI	TCCGGA	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
BspPI	GGATC	1 cut(s)	414
BspQI	GCTCTTC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	19, 64
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	5 cut(s)	60, 114, 198, 365, 381
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	114
Bst6I	CTCTTC	2 cut(s)	236, 272
BstC8I	GCNNGC	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	69, 174
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	182, 380
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	3, 91
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 200, 307
BstSCI	CCNGG	7 cut(s)	34, 40, 168, 197, 198, 209, 381
BstUI	CGCG	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	173, 203, 214
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	69, 174
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	2 cut(s)	182, 380
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
Cfr9I	CCCGGG	1 cut(s)	198
CviAII	CATG	1 cut(s)	435
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	236, 272
EarI	CTCTTC	2 cut(s)	236, 272
EciI	GGCGGA	2 cut(s)	79, 329
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	2 cut(s)	54, 321
Eco47I	GGWCC	3 cut(s)	32, 38, 118
Eco57I	CTGAAG	2 cut(s)	311, 323
Eco88I	CYCGRG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRV	GATATC	2 cut(s)	54, 321
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	2 cut(s)	337, 440
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	438
FaiI	YATR	6 cut(s)	337, 339, 359, 425, 436, 443
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	434
FauNDI	CATATG	1 cut(s)	337
FokI	GGATG	2 cut(s)	56, 161
FriOI	GRGCYC	1 cut(s)	390
GlaI	GCGC	2 cut(s)	181, 379
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	173, 203, 214
HhaI	GCGC	2 cut(s)	182, 380
Hin1II	CATG	1 cut(s)	438
Hin6I	GCGC	2 cut(s)	180, 378
HinP1I	GCGC	2 cut(s)	180, 378
HinfI	GANTC	2 cut(s)	11, 246
HphI	GGTGA	2 cut(s)	61, 247
Hpy188I	TCNGA	2 cut(s)	325, 369
Hpy188III	TCNNGA	2 cut(s)	243, 447
HpyAV	CCTTC	5 cut(s)	88, 286, 298, 346, 400
HpyCH4V	TGCA	3 cut(s)	335, 341, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 200, 307
Hsp92II	CATG	1 cut(s)	438
HspAI	GCGC	2 cut(s)	180, 378
Kpn2I	TCCGGA	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	406
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	3 cut(s)	286, 307, 385
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	3 cut(s)	223, 244, 289
MfeI	CAATTG	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	218, 410
MlyI	GAGTC	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	337, 440
MroI	TCCGGA	1 cut(s)	242
MspR9I	CCNGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	337
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	179, 200, 307
NciI	CCSGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
NsiI	ATGCAT	2 cut(s)	337, 440
PciSI	GCTCTTC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	7 cut(s)	21, 34, 40, 66, 215, 241, 387
PspPI	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
PspPPI	RGGWCCY	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	6 cut(s)	32, 38, 118, 171, 201, 213
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	7 cut(s)	36, 42, 170, 199, 200, 211, 383
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	111, 123, 144, 231, 291, 312, 348
SinI	GGWCC	3 cut(s)	32, 38, 118
SmaI	CCCGGG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	218, 410
SsiI	CCGC	4 cut(s)	90, 132, 178, 314
StyD4I	CCNGG	7 cut(s)	34, 40, 168, 197, 198, 209, 381
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	218, 410
TfiI	GAWTC	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	198
VpaK11BI	GGWCC	3 cut(s)	32, 38, 118
XagI	CCTNNNNNAGG	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	198
Zsp2I	ATGCAT	2 cut(s)	337, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.