Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Forward (+)

21528950 .. 21533159

Gene Structure 4210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATTTAACAAAATTAATATCATTCTCTCTCTTGTTTCTATCTCTTCTAATCCCGACGACGACGACGACCACTTCCACCGTTACATGCACTAACGCCGTTTGTCGCCGTGACGGCCCGATCATCCGTTTTCCATTCCGTCTAAAACACCAACAATCTCATTCTTGTGGTTACGACAAAGGCTTCGACTTAACGTGCGATATTAACGCCGGTAACAGAACAACCATAACGTTACCGTTTTCCGGTAACTTCACCGTGGAAGAGATCGATTACGCAGCTCAAGAGATTTGGATCAACGACCCAAACAACTGTCTTCCTCAACGGATCTTACAGCTAAACCTCAACTCGACGCCGTTTAGTGGCGTTTACATGCGTCAGTTCACGTTCTTTAACTGTCCTACTTCAGAGTATCTCCGTTTTAGGCCGTTGAATCCGATAACGTGTTTGAGTGGTAAAAACAGCACGGTGTTTGCTACTCCTTCGCCTAGAGTGATAAACTACTTGTCGTCTCAATCATGCCGGTTAATGAAAACCGTTTATGTTCCGGTTCGGTGGCCGTTTTATGAGCAAATCGTGTCGTCTTCGGATTTGAGTGATAACCTCTGGCTTACTTGGAGGGTTCCAAGATGTAGTAGGTGTGAGATTAAAGGTGGTAAGTGTGGGATTAAGAGTAATTCTTCTCGTGAAATCATTTGCTCTCATGTTCATAAACCAGCTATTCCGAGAAGAGCTCGTTACGCAATAGCCGTAGGCGCCGGAATCCCAGGAGCTTTAATAGTCTTTGGTCTTTTCTGCTTCGTATACAGCAAAATCAGTTCATGCATTAAACGGCGTCGTCTCGTCCCAACCCCAGAGATCAACAACGCTCAAGCCCATTATTTACATTCAAGTGTCATAGTAATGGGTCTTGATGGGCCAACTATAGAGTCGTACCCAAAGATAGTATTGGGAGAGAGCAAAAGGTTGCCCAAAGTTGATGACGCTACATGTGCTATTTGTCTCTCCGAGTATGAGCCAAAGGAGACGCTTCGGACAATTCCACAGTGTCAACATTGTTTTCATGCTGATTGTATCGACGAGTGGCTGAAGTTGAATGGGACTTGTCCGGTGTGTCGGAACTCACCGGAGCAGATTTTGCCGCCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

382

Amino Acids

42.93

Weight (kDa)

8.88

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	30 - 100	4.8e-16	Wall-associated receptor kinase galacturonan-binding
zf-RING_2	PF13639	329 - 372	5.2e-14	Ring finger domain
zf-RING_11	PF17123	330 - 358	2.9e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	330 - 371	7.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	330 - 372	3.4e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	330 - 371	3.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	801
AciI	CCGC	1 cut(s)	1139
AclI	AACGTT	1 cut(s)	230
AclWI	GGATC	2 cut(s)	299, 332
AcoI	YGGCCR	1 cut(s)	554
AcuI	CTGAAG	2 cut(s)	387, 1106
AcyI	GRCGYC	3 cut(s)	350, 753, 832
AfaI	GTAC	1 cut(s)	932
AfiI	CCNNNNNNNGG	2 cut(s)	242, 359
AflIII	ACRYGT	2 cut(s)	440, 986
AgsI	TTSAA	3 cut(s)	430, 888, 1093
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	5 cut(s)	278, 334, 716, 731, 770
AluI	AGCT	5 cut(s)	278, 334, 716, 731, 770
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	4 cut(s)	513, 842, 1004, 1016
AlwI	GGATC	2 cut(s)	299, 332
AoxI	GGCC	4 cut(s)	115, 422, 554, 914
ApeKI	GCWGC	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AseI	ATTAAT	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	2 cut(s)	116, 914
AsuHPI	GGTGA	2 cut(s)	244, 1113
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	681
BbsI	GAAGAC	2 cut(s)	305, 573
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	905
BceAI	ACGGC	8 cut(s)	83, 93, 130, 337, 409, 541, 731, 845
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	4 cut(s)	513, 842, 1004, 1016
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	756
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	276, 1139
BlsI	GCNGC	2 cut(s)	277, 1140
Bme1390I	CCNGG	1 cut(s)	765
BmgT120I	GGNCC	2 cut(s)	116, 914
BmiI	GGNNCC	2 cut(s)	621, 754
BmrFI	CCNGG	1 cut(s)	765
BpiI	GAAGAC	2 cut(s)	305, 573
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpuEI	CTTGAG	2 cut(s)	264, 852
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	290
BsaHI	GRCGYC	3 cut(s)	350, 753, 832
BsaJI	CCNNGG	2 cut(s)	255, 763
BsaWI	WCCGGW	4 cut(s)	242, 544, 1105, 1123
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 359
Bse118I	RCCGGY	2 cut(s)	209, 519
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	765
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	255, 763
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	242, 359
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	4 cut(s)	117, 424, 556, 916
BshNI	GGYRCC	1 cut(s)	752
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	7 cut(s)	210, 243, 520, 545, 756, 1106, 1124
BslFI	GGGAC	2 cut(s)	827, 1111
BslI	CCNNNNNNNGG	2 cut(s)	242, 359
BsmAI	GTCTC	4 cut(s)	513, 842, 1004, 1016
BsmBI	CGTCTC	3 cut(s)	513, 842, 1016
BsmFI	GGGAC	2 cut(s)	827, 1111
BsnI	GGCC	4 cut(s)	117, 424, 556, 916
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	5 cut(s)	120, 264, 291, 324, 855
BspACI	CCGC	1 cut(s)	1139
BspANI	GGCC	4 cut(s)	117, 424, 556, 916
BspDI	ATCGAT	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	621, 754
BspPI	GGATC	2 cut(s)	299, 332
BspQI	GCTCTTC	1 cut(s)	721
BspT107I	GGYRCC	1 cut(s)	752
BsrFI	RCCGGY	2 cut(s)	209, 519
BssAI	RCCGGY	2 cut(s)	209, 519
BssECI	CCNNGG	2 cut(s)	255, 763
BssMI	GATC	5 cut(s)	120, 264, 291, 324, 855
BssNAI	GTATAC	1 cut(s)	802
BssNI	GRCGYC	3 cut(s)	350, 753, 832
BssSI	CACGAG	1 cut(s)	681
Bst1107I	GTATAC	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	8 cut(s)	82, 237, 256, 311, 395, 466, 535, 1044
Bst6I	CTCTTC	3 cut(s)	51, 255, 721
BstACI	GRCGYC	3 cut(s)	350, 753, 832
BstAPI	GCANNNNNTGC	1 cut(s)	1135
BstC8I	GCNNGC	1 cut(s)	1143
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	5 cut(s)	123, 267, 294, 327, 858
BstMAI	GTCTC	4 cut(s)	513, 842, 1004, 1016
BstMBI	GATC	5 cut(s)	120, 264, 291, 324, 855
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 737, 752, 989, 1135
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	3 cut(s)	90, 373, 990
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	921
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	2 cut(s)	305, 573
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	802
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	117, 424, 556, 916
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	1049
Cac8I	GCNNGC	1 cut(s)	1143
CfoI	GCGC	1 cut(s)	755
Cfr10I	RCCGGY	2 cut(s)	209, 519
Cfr13I	GGNCC	2 cut(s)	116, 914
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	5 cut(s)	358, 362, 821, 989, 1033
Csp6I	GTAC	1 cut(s)	931
CviAII	CATG	7 cut(s)	87, 370, 516, 701, 819, 987, 1061
CviQI	GTAC	1 cut(s)	931
DinI	GGCGCC	1 cut(s)	754
DpnI	GATC	5 cut(s)	122, 266, 293, 326, 857
DpnII	GATC	5 cut(s)	120, 264, 291, 324, 855
EaeI	YGGCCR	1 cut(s)	554
Eam1104I	CTCTTC	3 cut(s)	51, 255, 721
EarI	CTCTTC	3 cut(s)	51, 255, 721
Ecl136II	GAGCTC	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	733
Eco53kI	GAGCTC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	387, 1106
EcoICRI	GAGCTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	1 cut(s)	824
EcoT38I	GRGCYC	1 cut(s)	733
EgeI	GGCGCC	1 cut(s)	754
EheI	GGCGCC	1 cut(s)	754
Esp3I	CGTCTC	3 cut(s)	513, 842, 1016
FaeI	CATG	7 cut(s)	90, 373, 519, 704, 822, 990, 1064
FaqI	GGGAC	2 cut(s)	827, 1111
FatI	CATG	7 cut(s)	86, 369, 515, 700, 818, 986, 1060
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	2 cut(s)	276, 1139
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	2 cut(s)	276, 1139
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	2 cut(s)	276, 1139
HaeII	RGCGCY	1 cut(s)	756
HaeIII	GGCC	4 cut(s)	117, 424, 556, 916
HapII	CCGG	7 cut(s)	210, 243, 520, 545, 756, 1106, 1124
HgaI	GACGC	5 cut(s)	358, 362, 821, 989, 1033
HhaI	GCGC	1 cut(s)	755
Hin1I	GRCGYC	3 cut(s)	350, 753, 832
Hin1II	CATG	7 cut(s)	90, 373, 519, 704, 822, 990, 1064
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HincII	GTYRAC	1 cut(s)	1049
HindII	GTYRAC	1 cut(s)	1049
HinfI	GANTC	3 cut(s)	430, 759, 926
HpaII	CCGG	7 cut(s)	210, 243, 520, 545, 756, 1106, 1124
HphI	GGTGA	2 cut(s)	244, 1113
Hpy166II	GTNNAC	4 cut(s)	367, 381, 802, 1049
Hpy188I	TCNGA	7 cut(s)	406, 435, 586, 723, 1006, 1032, 1116
Hpy188III	TCNNGA	4 cut(s)	55, 281, 683, 908
Hpy8I	GTNNAC	4 cut(s)	367, 381, 802, 1049
Hpy99I	CGWCG	7 cut(s)	61, 64, 67, 70, 352, 837, 1079
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	8 cut(s)	82, 237, 256, 311, 395, 466, 535, 1044
HpyCH4IV	ACGT	4 cut(s)	194, 230, 383, 440
HpyCH4V	TGCA	2 cut(s)	90, 822
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 737, 752, 989, 1135
HpySE526I	ACGT	4 cut(s)	194, 230, 383, 440
Hsp92I	GRCGYC	3 cut(s)	350, 753, 832
Hsp92II	CATG	7 cut(s)	90, 373, 519, 704, 822, 990, 1064
HspAI	GCGC	1 cut(s)	753
KasI	GGCGCC	1 cut(s)	752
Kzo9I	GATC	5 cut(s)	120, 264, 291, 324, 855
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	767, 1126
Lsp1109I	GCAGC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	4 cut(s)	194, 230, 383, 440
MaeIII	GTNAC	7 cut(s)	82, 110, 170, 212, 231, 245, 734
MalI	GATC	5 cut(s)	122, 266, 293, 326, 857
MboI	GATC	5 cut(s)	120, 264, 291, 324, 855
MboII	GAAGA	6 cut(s)	38, 272, 305, 573, 669, 738
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	3 cut(s)	14, 673, 1035
Mly113I	GGCGCC	1 cut(s)	753
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	1094
MnlI	CCTC	4 cut(s)	327, 350, 609, 611
Mph1103I	ATGCAT	1 cut(s)	824
MslI	CAYNNNNRTG	3 cut(s)	165, 888, 899
MspI	CCGG	7 cut(s)	210, 243, 520, 545, 756, 1106, 1124
MspR9I	CCNGG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	5 cut(s)	114, 737, 752, 989, 1135
NarI	GGCGCC	1 cut(s)	753
NdeII	GATC	5 cut(s)	120, 264, 291, 324, 855
NlaIII	CATG	7 cut(s)	90, 373, 519, 704, 822, 990, 1064
NlaIV	GGNNCC	2 cut(s)	621, 754
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	824
NspI	RCATGY	3 cut(s)	90, 373, 990
PciI	ACATGT	1 cut(s)	986
PciSI	GCTCTTC	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 744
PfeI	GAWTC	2 cut(s)	430, 759
PkrI	GCNGC	2 cut(s)	277, 1140
PleI	GAGTC	1 cut(s)	934
PluTI	GGCGCC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	934
PscI	ACATGT	1 cut(s)	986
PshBI	ATTAAT	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	733
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	2 cut(s)	621, 754
PspPI	GGNCC	2 cut(s)	116, 914
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
RseI	CAYNNNNRTG	3 cut(s)	165, 888, 899
SacI	GAGCTC	1 cut(s)	733
SapI	GCTCTTC	1 cut(s)	721
SatI	GCNGC	2 cut(s)	276, 1139
Sau3AI	GATC	5 cut(s)	120, 264, 291, 324, 855
Sau96I	GGNCC	2 cut(s)	116, 914
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	921
SfoI	GGCGCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	3 cut(s)	165, 888, 899
SmlI	CTYRAG	2 cut(s)	279, 867
SmoI	CTYRAG	2 cut(s)	279, 867
Sse9I	AATT	3 cut(s)	14, 673, 1035
SsiI	CCGC	1 cut(s)	1139
SspDI	GGCGCC	1 cut(s)	752
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	733
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	8 cut(s)	82, 237, 256, 311, 395, 466, 535, 1044
TaiI	ACGT	4 cut(s)	197, 233, 386, 443
TaqI	TCGA	4 cut(s)	186, 267, 347, 1074
TasI	AATT	3 cut(s)	14, 673, 1035
TauI	GCSGC	1 cut(s)	1141
TfiI	GAWTC	2 cut(s)	430, 759
TscAI	CASTG	1 cut(s)	1049
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	542, 695, 807, 1049
TspGWI	ACGGA	4 cut(s)	116, 128, 337, 404
TspRI	CASTG	1 cut(s)	1049
VspI	ATTAAT	1 cut(s)	17
XceI	RCATGY	3 cut(s)	90, 373, 990
XmiI	GTMKAC	1 cut(s)	801
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.