Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039326.1

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Reverse (-)

11053 .. 11355

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039326.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgcgacgcacatcactcccagaatttaattcaattggggctccgcagcctggaatcgtaaagggactcgatgtggcaacacttgcggcttacccgaaaatagtcctcagtgaaagccggcgtctaccgcagccggatgatagcacttgttcgatatgcttgtccgagtaccggccgaaggagatactgaagaccatacccgaatgccaacattgcttccatgctaattgcatcgatgaatggcttaaattgaatgctacttgccccatttgtagaaaatctccacaaggactcagtcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

8.2

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	3 cut(s)	44, 86, 128
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	50, 171, 178
AgsI	TTSAA	2 cut(s)	33, 253
AjnI	CCWGG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	46, 130
ApoI	RAATTY	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	58, 142
BciT130I	CCWGG	1 cut(s)	51
BisI	GCNGC	3 cut(s)	47, 87, 131
BlsI	GCNGC	3 cut(s)	48, 88, 132
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 171, 178
Bse118I	RCCGGY	2 cut(s)	117, 171
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	234
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	50, 171, 178
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	121
BseX3I	CGGCCG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	58, 142
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	118, 134, 172
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	50, 171, 178
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	2 cut(s)	209, 259
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	43
BspACI	CCGC	3 cut(s)	44, 86, 128
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	2 cut(s)	117, 171
BssAI	RCCGGY	2 cut(s)	117, 171
BssNI	GRCGYC	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	107, 293
BstF5I	GGATG	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 127, 213
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	58, 142
BstV2I	GAAGAC	1 cut(s)	197
BstZI	CGGCCG	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	119
Cfr10I	RCCGGY	2 cut(s)	117, 171
ClaI	ATCGAT	1 cut(s)	234
CseI	GACGC	2 cut(s)	15, 110
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	7 cut(s)	41, 49, 89, 117, 133, 175, 244
CviKI_1	RGCY	7 cut(s)	41, 49, 89, 117, 133, 175, 244
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	107, 293
EaeI	YGGCCR	1 cut(s)	173
EagI	CGGCCG	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	1 cut(s)	224
FaiI	YATR	3 cut(s)	157, 197, 222
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	47, 87, 131
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	47, 87, 131
GluI	GCNGC	3 cut(s)	47, 87, 131
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	3 cut(s)	118, 134, 172
HgaI	GACGC	2 cut(s)	15, 110
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	3 cut(s)	54, 66, 291
HpaII	CCGG	3 cut(s)	118, 134, 172
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 127, 213
HpyF3I	CTNAG	2 cut(s)	107, 293
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	6 cut(s)	33, 36, 63, 131, 147, 185
Lsp1109I	GCAGC	2 cut(s)	58, 142
LweI	GCATC	1 cut(s)	240
MboII	GAAGA	1 cut(s)	202
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	5 cut(s)	23, 28, 33, 226, 248
MlyI	GAGTC	2 cut(s)	60, 285
MnlI	CCTC	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	2 cut(s)	27, 246
MspI	CCGG	3 cut(s)	118, 134, 172
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	2 cut(s)	209, 259
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	83, 127, 213
NaeI	GCCGGC	1 cut(s)	119
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	42
PctI	GAATGC	2 cut(s)	209, 259
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	54
PflFI	GACNNNGTC	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	48, 88, 132
PleI	GAGTC	2 cut(s)	60, 285
PpsI	GAGTC	2 cut(s)	60, 285
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	294
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	27, 246
SatI	GCNGC	3 cut(s)	47, 87, 131
SchI	GAGTC	2 cut(s)	60, 285
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	240
Sse9I	AATT	5 cut(s)	23, 28, 33, 226, 248
SsiI	CCGC	3 cut(s)	44, 86, 128
StyD4I	CCNGG	1 cut(s)	49
TaqI	TCGA	3 cut(s)	69, 152, 234
TasI	AATT	5 cut(s)	23, 28, 33, 226, 248
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	27, 246
Tru9I	TTAA	2 cut(s)	27, 246
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	46, 130
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.