Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Reverse (-)

20354638 .. 20355348

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATATTCCCAGACCAATCTTCTCCTTCTTCATCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCAAGCAGCTTAGAAAATTGCATGTTGGATGATATCTGCGGCGATGGCGAGCCGGCCATCCAATTCCCGTTTGGGATACAAAAAAAACAGCCAGAGTCGTGCTCCTATCCCGGTTTTGAACTGTCCTGTGACAGCAGCAACCATACAATCCTCACCCTTCCTTATTCCGGGCAGTTCGCTGTCCAGGGTATAGACTATGCCGAACAACAAATATGGATTAACGATCCAAACAGCTGCCTCGCACAACGAGTTCTGTCCCTCAATCTCTCAGGCTCTCCATTTTATGGTTTGACAAACGAAAGCTTTACGTTCTTTAATTGCTCGTTGGATTATTTGAAATACAGATTATTAAACCCCATTGCTTGCATGAGCGGCTCTTCGTACACAGTTTTTGCCACCACTTCTTCTAGGGTGATTAGTTTCGTGGCGTCCACATCGACATGCACTCAAATCGGTACGTTTGTTGTTCCGGTTGAGTTTCCGTTGTACGCGGAGGTTGTGTCGTCAGACCTGAATGGCTATCTCCGGTTCGCATGGGACAGGCCAGGGTGCGGCCGTTGTGCCGCACGTGGTGGCCGGTGTGGGTTTGAGAATAATTCTAGTCGTCAAGTTGTTTGCTCAAGACTTCCTCAGCGAGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

237

Amino Acids

26.33

Weight (kDa)

5.16

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	35 - 97	2.7e-19	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	438
AccII	CGCG	1 cut(s)	557
AciI	CCGC	5 cut(s)	105, 438, 557, 618, 630
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	3 cut(s)	120, 619, 640
AcvI	CACGTG	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	494
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	3 cut(s)	449, 523, 554
AfiI	CCNNNNNNNGG	4 cut(s)	233, 350, 617, 701
AgsI	TTSAA	2 cut(s)	185, 403
AjnI	CCWGG	2 cut(s)	249, 610
AluBI	AGCT	3 cut(s)	75, 300, 369
AluI	AGCT	3 cut(s)	75, 300, 369
Alw21I	GWGCWC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	4 cut(s)	120, 608, 619, 640
ApeKI	GCWGC	3 cut(s)	72, 201, 300
AsuC2I	CCSGG	2 cut(s)	177, 235
AsuHPI	GGTGA	2 cut(s)	211, 490
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BbrPI	CACGTG	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	84, 213, 287
BccI	CCATC	2 cut(s)	104, 131
BceAI	ACGGC	1 cut(s)	606
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	2 cut(s)	251, 612
BciVI	GTATCC	1 cut(s)	135
BcnI	CCSGG	2 cut(s)	177, 235
BfaI	CTAG	2 cut(s)	474, 666
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	7 cut(s)	73, 106, 202, 301, 439, 619, 630
BlsI	GCNGC	7 cut(s)	74, 107, 203, 302, 440, 620, 631
Bme1390I	CCNGG	4 cut(s)	177, 235, 251, 612
BmrFI	CCNGG	4 cut(s)	177, 235, 251, 612
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	670
BpuMI	CCSGG	2 cut(s)	177, 235
BsaAI	YACGTR	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	250, 611
BsaWI	WCCGGW	2 cut(s)	535, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 350, 617, 701
Bse118I	RCCGGY	2 cut(s)	118, 642
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	251, 612
BseDI	CCNNGG	2 cut(s)	250, 611
BseGI	GGATG	3 cut(s)	33, 100, 123
BseLI	CCNNNNNNNGG	4 cut(s)	233, 350, 617, 701
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	348, 710
BseX3I	CGGCCG	1 cut(s)	619
BseXI	GCAGC	3 cut(s)	84, 213, 287
Bsh1236I	CGCG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	4 cut(s)	122, 610, 621, 642
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	6 cut(s)	119, 177, 234, 536, 592, 643
BslFI	GGGAC	2 cut(s)	307, 617
BslI	CCNNNNNNNGG	4 cut(s)	233, 350, 617, 701
BsmFI	GGGAC	2 cut(s)	307, 617
BsnI	GGCC	4 cut(s)	122, 610, 621, 642
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	5 cut(s)	105, 438, 557, 618, 630
BspANI	GGCC	4 cut(s)	122, 610, 621, 642
BspCNI	CTCAG	2 cut(s)	347, 709
BspFNI	CGCG	1 cut(s)	557
BspPI	GGATC	1 cut(s)	284
BspQI	GCTCTTC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	118, 642
BssAI	RCCGGY	2 cut(s)	118, 642
BssECI	CCNNGG	2 cut(s)	250, 611
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	251, 612
Bst4CI	ACNGT	2 cut(s)	189, 454
Bst6I	CTCTTC	2 cut(s)	44, 448
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	116, 120, 430
BstDEI	CTNAG	3 cut(s)	76, 334, 696
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	3 cut(s)	33, 100, 123
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 438
BstNI	CCWGG	2 cut(s)	251, 612
BstNSI	RCATGY	2 cut(s)	91, 510
BstSCI	CCNGG	4 cut(s)	175, 233, 249, 610
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	3 cut(s)	84, 213, 287
BstZI	CGGCCG	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	4 cut(s)	122, 610, 621, 642
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	33, 100, 123
Cac8I	GCNNGC	3 cut(s)	116, 120, 430
Cfr10I	RCCGGY	2 cut(s)	118, 642
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	3 cut(s)	448, 522, 553
CviAII	CATG	4 cut(s)	88, 433, 507, 600
CviQI	GTAC	3 cut(s)	448, 522, 553
DdeI	CTNAG	3 cut(s)	76, 334, 696
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	638
EaeI	YGGCCR	3 cut(s)	120, 619, 640
EagI	CGGCCG	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	44, 448
EarI	CTCTTC	2 cut(s)	44, 448
EclXI	CGGCCG	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	619
Eco72I	CACGTG	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	249, 610
EcoRV	GATATC	1 cut(s)	100
FaeI	CATG	4 cut(s)	91, 436, 510, 603
FaiI	YATR	9 cut(s)	89, 210, 257, 264, 280, 351, 434, 508, 601
FaqI	GGGAC	2 cut(s)	307, 617
FatI	CATG	4 cut(s)	87, 432, 506, 599
Fnu4HI	GCNGC	7 cut(s)	73, 106, 202, 301, 439, 619, 630
FokI	GGATG	3 cut(s)	20, 107, 110
Fsp4HI	GCNGC	7 cut(s)	73, 106, 202, 301, 439, 619, 630
FspBI	CTAG	2 cut(s)	474, 666
GluI	GCNGC	7 cut(s)	73, 106, 202, 301, 439, 619, 630
HaeIII	GGCC	4 cut(s)	122, 610, 621, 642
HapII	CCGG	6 cut(s)	119, 177, 234, 536, 592, 643
HgaI	GACGC	1 cut(s)	483
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	91, 436, 510, 603
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	6 cut(s)	119, 177, 234, 536, 592, 643
HphI	GGTGA	2 cut(s)	211, 490
Hpy166II	GTNNAC	2 cut(s)	450, 498
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	1 cut(s)	687
Hpy8I	GTNNAC	2 cut(s)	450, 498
HpyAV	CCTTC	2 cut(s)	37, 233
HpyCH4III	ACNGT	2 cut(s)	189, 454
HpyCH4IV	ACGT	3 cut(s)	374, 524, 634
HpyCH4V	TGCA	3 cut(s)	87, 432, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 438
HpyF3I	CTNAG	3 cut(s)	76, 334, 696
HpySE526I	ACGT	3 cut(s)	374, 524, 634
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	91, 436, 510, 603
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	289
LguI	GCTCTTC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	3 cut(s)	84, 213, 287
MaeI	CTAG	2 cut(s)	474, 666
MaeII	ACGT	3 cut(s)	374, 524, 634
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	5 cut(s)	82, 128, 382, 661, 706
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	72, 372
MnlI	CCTC	7 cut(s)	47, 227, 314, 335, 553, 695, 705
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	3 cut(s)	285, 381, 416
MslI	CAYNNNNRTG	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	6 cut(s)	119, 177, 234, 536, 592, 643
MspR9I	CCNGG	4 cut(s)	177, 235, 251, 612
MvaI	CCWGG	2 cut(s)	251, 612
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	111, 438
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	177, 235
NdeII	GATC	1 cut(s)	289
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	4 cut(s)	91, 436, 510, 603
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	2 cut(s)	91, 510
PciSI	GCTCTTC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	7 cut(s)	74, 107, 203, 302, 440, 620, 631
PleI	GAGTC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	249, 610
PspCI	CACGTG	1 cut(s)	635
PspGI	CCWGG	2 cut(s)	249, 610
PvuII	CAGCTG	1 cut(s)	300
RsaI	GTAC	3 cut(s)	449, 523, 554
RsaNI	GTAC	3 cut(s)	448, 522, 553
RseI	CAYNNNNRTG	1 cut(s)	505
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	285, 381, 416
SatI	GCNGC	7 cut(s)	73, 106, 202, 301, 439, 619, 630
Sau3AI	GATC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	4 cut(s)	177, 235, 251, 612
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	9 cut(s)	77, 302, 371, 377, 527, 564, 579, 637, 706
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
Sse9I	AATT	5 cut(s)	82, 128, 382, 661, 706
SsiI	CCGC	5 cut(s)	105, 438, 557, 618, 630
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	2 cut(s)	474, 666
StyD4I	CCNGG	4 cut(s)	175, 233, 249, 610
TaaI	ACNGT	2 cut(s)	189, 454
TaiI	ACGT	3 cut(s)	377, 527, 637
TaqI	TCGA	1 cut(s)	503
TasI	AATT	5 cut(s)	82, 128, 382, 661, 706
TauI	GCSGC	4 cut(s)	108, 441, 621, 632
Tru1I	TTAA	3 cut(s)	285, 381, 416
Tru9I	TTAA	3 cut(s)	285, 381, 416
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	72, 201, 300
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	17, 22
TspGWI	ACGGA	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	699
XceI	RCATGY	2 cut(s)	91, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	2 cut(s)	474, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.