Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Forward (+)

22945296 .. 22950215

Gene Structure 4920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAAGCTCAAACTCTTCTCAATCTTCCTTCCGGAGATTTCACCGTCCAGGGCATAGACTACGGCGAGCAAGAGATATGGCTCAACGATCCAAACAACTGCCTCCCCAAACGGCTCCTCTCTCTGGACCTCATCGGCTCTCCGTTTCGTCCAGGGTTTAGTGAAGACTTCACCTTCTTTAACTGCTCGCAGGACTACTTGACATACAAGTACAAGCTAAACCCTATTGCTTGCATGAGCGGTCCTAACCGCACGGTTTTTGCCACCAATTCTGCGACGGTGATTTGGTACTTGTCGACGTACTGCAGTAAGATCGGAACTTTTCCTGTTCCGGTTGAGTGGACTTTTCACCAGGTGATTGCGTCGTCGGATCTCGACTATAATCTCCGGCTAAAGTGGGACCGGCCGGGGTGCGGCAGCTGCGTAGAGCGGGGCGGAACGTGTGGCTTCAAGACCAATTCTACTAAAGTTGTTTGCTCCAGCATTCCTCAACGAGGAATCCCAAGGGGTGCACGCTATGCTATTACAGTGGGAGTTGGAGTGCCGGCAATTTTGTGCCTTCTAGGGCTATTATGTTGCATGTGTGGCAGGATCAAGACTTTGACAAGGAGAAACACATCACTCCCAGAATTTAACTCAATTGTGGCTCCGCAGCCTGCAATTGTTATGGGTCTCGATGTGGAAACACTTGCAGCCTACCCGAAAATAGTCCTTGGTGAGAGCCGGCGTCTACCAAAGCCCGATGATATCACTTGTTCGATTTGCTTGTCCGATTACCGGCCGAAGGAGACACTGAAGACCATACCCGAGTGCCAACATTGCTTCCATGCTAATTGCATCGATGAATGGCTTAAACTGAATGCTACTTGCCCTATTTGTAGAAAATCTCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

299

Amino Acids

33.1

Weight (kDa)

8.47

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1674	PF07896	32 - 70	5.1e-11	Protein of unknown function (DUF1674)
GUB_WAK_bind	PF13947	79 - 145	6.9e-16	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	213 - 274	7.6e-06	Wall-associated receptor kinase C-terminal
zf-RING_2	PF13639	366 - 409	1.4e-12	Ring finger domain
zf-RING_11	PF17123	367 - 395	2.1e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	367 - 408	3.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	377 - 409	2.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	240, 430
AccI	GTMKAC	2 cut(s)	296, 730
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	6 cut(s)	240, 250, 414, 430, 435, 650
AclWI	GGATC	3 cut(s)	83, 378, 599
AcoI	YGGCCR	2 cut(s)	404, 779
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	727
AdeI	CACNNNGTG	1 cut(s)	355
AfaI	GTAC	3 cut(s)	212, 290, 302
AfiI	CCNNNNNNNGG	5 cut(s)	124, 413, 494, 777, 784
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	3 cut(s)	48, 151, 351
AluBI	AGCT	3 cut(s)	8, 217, 420
AluI	AGCT	3 cut(s)	8, 217, 420
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	677, 782
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	3 cut(s)	83, 378, 599
Ama87I	CYCGRG	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	32
AoxI	GGCC	2 cut(s)	404, 779
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	4 cut(s)	417, 420, 652, 692
ApoI	RAATTY	1 cut(s)	629
AspS9I	GGNCC	3 cut(s)	127, 242, 400
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	6 cut(s)	34, 163, 292, 341, 367, 728
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	3 cut(s)	127, 242, 400
BaeGI	GKGCMC	1 cut(s)	514
BbsI	GAAGAC	2 cut(s)	171, 803
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	4 cut(s)	407, 429, 664, 704
BceAI	ACGGC	2 cut(s)	79, 128
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	3 cut(s)	50, 153, 353
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	677, 782
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	5 cut(s)	415, 418, 421, 653, 693
BlsI	GCNGC	5 cut(s)	416, 419, 422, 654, 694
Bme1390I	CCNGG	4 cut(s)	50, 153, 353, 408
Bme18I	GGWCC	3 cut(s)	127, 242, 400
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	3 cut(s)	127, 242, 400
BmiI	GGNNCC	3 cut(s)	116, 401, 648
BmrFI	CCNGG	4 cut(s)	50, 153, 353, 408
BmsI	GCATC	1 cut(s)	846
BpiI	GAAGAC	2 cut(s)	171, 803
BpmI	CTGGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	727
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	5 cut(s)	49, 152, 407, 503, 712
BsaWI	WCCGGW	2 cut(s)	32, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 413, 494, 777, 784
Bse118I	RCCGGY	4 cut(s)	402, 544, 723, 777
Bse3DI	GCAATG	1 cut(s)	817
BseAI	TCCGGA	1 cut(s)	32
BseBI	CCWGG	3 cut(s)	50, 153, 353
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	5 cut(s)	49, 152, 407, 503, 712
BseLI	CCNNNNNNNGG	5 cut(s)	124, 413, 494, 777, 784
BseMI	GCAATG	1 cut(s)	817
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	514
BseX3I	CGGCCG	2 cut(s)	404, 779
BseXI	GCAGC	4 cut(s)	407, 429, 664, 704
Bsh1285I	CGRYCG	2 cut(s)	407, 782
BshFI	GGCC	2 cut(s)	406, 781
BshVI	ATCGAT	1 cut(s)	840
BsiEI	CGRYCG	2 cut(s)	407, 782
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	806
BsiSI	CCGG	8 cut(s)	33, 332, 388, 403, 407, 545, 724, 778
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	5 cut(s)	124, 413, 494, 777, 784
BsmAI	GTCTC	2 cut(s)	677, 782
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	2 cut(s)	483, 865
BsnI	GGCC	2 cut(s)	406, 781
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	88, 312, 370, 591
BspACI	CCGC	6 cut(s)	240, 250, 414, 430, 435, 650
BspANI	GGCC	2 cut(s)	406, 781
BspDI	ATCGAT	1 cut(s)	840
BspEI	TCCGGA	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	116, 401, 648
BspMAI	CTGCAG	1 cut(s)	308
BspPI	GGATC	3 cut(s)	83, 378, 599
BspTNI	GGTCTC	1 cut(s)	677
BsrBI	CCGCTC	2 cut(s)	240, 430
BsrDI	GCAATG	1 cut(s)	817
BsrFI	RCCGGY	4 cut(s)	402, 544, 723, 777
BssAI	RCCGGY	4 cut(s)	402, 544, 723, 777
BssECI	CCNNGG	5 cut(s)	49, 152, 407, 503, 712
BssMI	GATC	4 cut(s)	88, 312, 370, 591
BssNI	GRCGYC	1 cut(s)	727
BssT1I	CCWWGG	2 cut(s)	503, 712
Bst2UI	CCWGG	3 cut(s)	50, 153, 353
Bst4CI	ACNGT	4 cut(s)	46, 256, 280, 529
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	7 cut(s)	68, 188, 232, 514, 546, 657, 725
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstKTI	GATC	4 cut(s)	91, 315, 373, 594
BstMAI	GTCTC	2 cut(s)	677, 782
BstMBI	GATC	4 cut(s)	88, 312, 370, 591
BstMCI	CGRYCG	2 cut(s)	407, 782
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 518, 585, 819
BstNI	CCWGG	3 cut(s)	50, 153, 353
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	4 cut(s)	48, 151, 351, 406
BstSFI	CTRYAG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	4 cut(s)	407, 429, 664, 704
BstV2I	GAAGAC	2 cut(s)	171, 803
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZI	CGGCCG	2 cut(s)	404, 779
Bsu15I	ATCGAT	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	406, 781
BsuTUI	ATCGAT	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	534, 791
Cac8I	GCNNGC	7 cut(s)	68, 188, 232, 514, 546, 657, 725
Cfr10I	RCCGGY	4 cut(s)	402, 544, 723, 777
Cfr13I	GGNCC	3 cut(s)	127, 242, 400
ClaI	ATCGAT	1 cut(s)	840
CseI	GACGC	2 cut(s)	351, 716
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	211, 289, 301
CviAII	CATG	3 cut(s)	235, 580, 827
CviQI	GTAC	3 cut(s)	211, 289, 301
DpnI	GATC	4 cut(s)	90, 314, 372, 593
DpnII	GATC	4 cut(s)	88, 312, 370, 591
DraIII	CACNNNGTG	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	404, 779
EagI	CGGCCG	2 cut(s)	404, 779
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	450
EclXI	CGGCCG	2 cut(s)	404, 779
Eco130I	CCWWGG	2 cut(s)	503, 712
Eco31I	GGTCTC	1 cut(s)	677
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	3 cut(s)	127, 242, 400
Eco52I	CGGCCG	2 cut(s)	404, 779
Eco57I	CTGAAG	1 cut(s)	815
Eco88I	CYCGRG	1 cut(s)	806
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoRII	CCWGG	3 cut(s)	48, 151, 351
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	503, 712
ErhI	CCWWGG	2 cut(s)	503, 712
FaeI	CATG	3 cut(s)	238, 583, 830
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	234, 579, 826
FauI	CCCGC	1 cut(s)	423
FblI	GTMKAC	2 cut(s)	296, 730
Fnu4HI	GCNGC	5 cut(s)	415, 418, 421, 653, 693
Fsp4HI	GCNGC	5 cut(s)	415, 418, 421, 653, 693
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	5 cut(s)	415, 418, 421, 653, 693
GsuI	CTGGAG	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	406, 781
HapII	CCGG	8 cut(s)	33, 332, 388, 403, 407, 545, 724, 778
HgaI	GACGC	2 cut(s)	351, 716
Hin1I	GRCGYC	1 cut(s)	727
Hin1II	CATG	3 cut(s)	238, 583, 830
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	8 cut(s)	33, 332, 388, 403, 407, 545, 724, 778
HphI	GGTGA	6 cut(s)	34, 163, 292, 341, 367, 728
Hpy166II	GTNNAC	4 cut(s)	297, 342, 512, 731
Hpy188I	TCNGA	3 cut(s)	317, 370, 772
Hpy188III	TCNNGA	6 cut(s)	33, 125, 374, 451, 595, 674
Hpy8I	GTNNAC	4 cut(s)	297, 342, 512, 731
Hpy99I	CGWCG	4 cut(s)	280, 301, 367, 370
HpyAV	CCTTC	4 cut(s)	39, 184, 569, 778
HpyCH4III	ACNGT	4 cut(s)	46, 256, 280, 529
HpyCH4IV	ACGT	2 cut(s)	299, 440
HpyCH4V	TGCA	7 cut(s)	234, 306, 512, 579, 659, 692, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 518, 585, 819
HpySE526I	ACGT	2 cut(s)	299, 440
Hsp92I	GRCGYC	1 cut(s)	727
Hsp92II	CATG	3 cut(s)	238, 583, 830
Kpn2I	TCCGGA	1 cut(s)	32
KroI	GCCGGC	2 cut(s)	544, 723
KroNI	GCCGGC	2 cut(s)	546, 725
Kzo9I	GATC	4 cut(s)	88, 312, 370, 591
LmnI	GCTCC	3 cut(s)	120, 482, 652
Lsp1109I	GCAGC	4 cut(s)	407, 429, 664, 704
LweI	GCATC	1 cut(s)	846
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	299, 440
MalI	GATC	4 cut(s)	90, 314, 372, 593
MbiI	CCGCTC	2 cut(s)	240, 430
MboI	GATC	4 cut(s)	88, 312, 370, 591
MboII	GAAGA	4 cut(s)	8, 17, 176, 808
MfeI	CAATTG	2 cut(s)	639, 660
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	8 cut(s)	268, 457, 549, 629, 639, 660, 832, 892
MmeI	TCCRAC	2 cut(s)	348, 517
MnlI	CCTC	5 cut(s)	113, 128, 140, 488, 498
MroI	TCCGGA	1 cut(s)	32
MroNI	GCCGGC	2 cut(s)	544, 723
MseI	TTAA	4 cut(s)	180, 633, 852, 895
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	8 cut(s)	33, 332, 388, 403, 407, 545, 724, 778
MspR9I	CCNGG	4 cut(s)	50, 153, 353, 408
MunI	CAATTG	2 cut(s)	639, 660
Mva1269I	GAATGC	2 cut(s)	483, 865
MvaI	CCWGG	3 cut(s)	50, 153, 353
MwoI	GCNNNNNNNGC	4 cut(s)	420, 518, 585, 819
NaeI	GCCGGC	2 cut(s)	546, 725
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	88, 312, 370, 591
NgoMIV	GCCGGC	2 cut(s)	544, 723
NlaIII	CATG	3 cut(s)	238, 583, 830
NlaIV	GGNNCC	3 cut(s)	116, 401, 648
NspI	RCATGY	1 cut(s)	583
PctI	GAATGC	2 cut(s)	483, 865
PdiI	GCCGGC	2 cut(s)	546, 725
PfeI	GAWTC	1 cut(s)	498
PkrI	GCNGC	5 cut(s)	416, 419, 422, 654, 694
Psp6I	CCWGG	3 cut(s)	48, 151, 351
PspGI	CCWGG	3 cut(s)	48, 151, 351
PspN4I	GGNNCC	3 cut(s)	116, 401, 648
PspPI	GGNCC	3 cut(s)	127, 242, 400
PstI	CTGCAG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	3 cut(s)	212, 290, 302
RsaNI	GTAC	3 cut(s)	211, 289, 301
SalI	GTCGAC	1 cut(s)	295
SaqAI	TTAA	4 cut(s)	180, 633, 852, 895
SatI	GCNGC	5 cut(s)	415, 418, 421, 653, 693
Sau3AI	GATC	4 cut(s)	88, 312, 370, 591
Sau96I	GGNCC	3 cut(s)	127, 242, 400
ScrFI	CCNGG	4 cut(s)	50, 153, 353, 408
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	8 cut(s)	10, 132, 176, 219, 302, 357, 422, 443
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	846
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	3 cut(s)	127, 242, 400
Sse9I	AATT	8 cut(s)	268, 457, 549, 629, 639, 660, 832, 892
SsiI	CCGC	6 cut(s)	240, 250, 414, 430, 435, 650
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	4 cut(s)	48, 151, 351, 406
StyI	CCWWGG	2 cut(s)	503, 712
TaaI	ACNGT	4 cut(s)	46, 256, 280, 529
TaiI	ACGT	2 cut(s)	302, 443
TaqI	TCGA	5 cut(s)	296, 375, 675, 758, 840
TasI	AATT	8 cut(s)	268, 457, 549, 629, 639, 660, 832, 892
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	4 cut(s)	180, 633, 852, 895
Tru9I	TTAA	4 cut(s)	180, 633, 852, 895
TscAI	CASTG	2 cut(s)	534, 798
TseI	GCWGC	4 cut(s)	417, 420, 652, 692
TspDTI	ATGAA	2 cut(s)	17, 858
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	534, 798
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	3 cut(s)	127, 242, 400
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	2 cut(s)	296, 730
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.