Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035898.1

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Forward (+)

682 .. 1398

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035898.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgaatactctcagagccatcatcttctccttccttgtcttctcttcattctcatgccttaaaacgagtagtaccttagagacttgcaaaaacgctgtttgccaaaccagcgaggccgtaatccgtttcccgtttcggatcgacaaacgccagccggagacttgtggcttccccggttttgatctgacctgtgacatgacatcccaaacactgctcaatcttccctcttcgggagatttcaccgttcagggcatagactacggcgagcaagagatatggatcaacgatccaaacacctgcctccccaaacggctcctctctctgaacctcaccggctctccgtttcgggctgggtttagtgaagacttcacgttctttaactgctccttggactacttgaagtacaagctaaaccctattgcttgcatgagtggttccaactacacggttttcgccaccaattctgcgagggtgattaggtacttgtcgacgtgcagtaagattggaacgttttctgttccggtcgagtggacgtttcaccaggaggttatctcgtcggacctcgacgatcatctccggctaaagtgggaccgaccggggtgcggcacctgcgagttgcgtggcggaaagtgtggcttcaagaccaattctactaaagttgtttgctccagccttaatcaacgaggtaagaaccacgtcctttcttacgttagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

238

Amino Acids

26.62

Weight (kDa)

8.2

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	305, 617
Acc36I	ACCTGC	2 cut(s)	305, 617
AccB1I	GGYRCC	1 cut(s)	605
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	2 cut(s)	603, 624
AclI	AACGTT	1 cut(s)	509
AclWI	GGATC	3 cut(s)	146, 281, 287
AfaI	GTAC	3 cut(s)	73, 404, 482
AfiI	CCNNNNNNNGG	2 cut(s)	230, 602
AgsI	TTSAA	2 cut(s)	400, 640
AjiI	CACGTC	2 cut(s)	492, 697
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	2 cut(s)	409, 714
AluI	AGCT	2 cut(s)	409, 714
Alw26I	GTCTC	2 cut(s)	74, 152
AlwI	GGATC	3 cut(s)	146, 281, 287
AoxI	GGCC	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	559, 589
AsuC2I	CCSGG	2 cut(s)	174, 597
AsuHPI	GGTGA	4 cut(s)	232, 322, 484, 530
AvaII	GGWCC	2 cut(s)	559, 589
BanI	GGYRCC	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	31, 369
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	3 cut(s)	101, 277, 326
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BciT130I	CCWGG	1 cut(s)	542
BcnI	CCSGG	2 cut(s)	174, 597
BcoDI	GTCTC	2 cut(s)	74, 152
BfuAI	ACCTGC	2 cut(s)	305, 617
BisI	GCNGC	1 cut(s)	604
BlsI	GCNGC	1 cut(s)	605
Bme1390I	CCNGG	3 cut(s)	174, 542, 597
Bme18I	GGWCC	2 cut(s)	559, 589
BmgBI	CACGTC	2 cut(s)	492, 697
BmgT120I	GGNCC	2 cut(s)	559, 589
BmiI	GGNNCC	4 cut(s)	314, 436, 590, 607
BmrFI	CCNGG	3 cut(s)	174, 542, 597
BpiI	GAAGAC	2 cut(s)	31, 369
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	1 cut(s)	652
BpuMI	CCSGG	2 cut(s)	174, 597
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	172, 387, 596
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 602
Bse118I	RCCGGY	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	172, 387, 596
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	230, 602
BseMII	CTCAG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	514
Bsh1285I	CGRYCG	2 cut(s)	525, 596
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	605
BsiEI	CGRYCG	2 cut(s)	525, 596
BsiSI	CCGG	6 cut(s)	155, 174, 333, 521, 577, 596
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	230, 602
BsmAI	GTCTC	2 cut(s)	74, 152
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	116
Bsp143I	GATC	5 cut(s)	138, 181, 279, 286, 568
BspACI	CCGC	2 cut(s)	603, 624
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	314, 436, 590, 607
BspMI	ACCTGC	2 cut(s)	305, 617
BspPI	GGATC	3 cut(s)	146, 281, 287
BspT107I	GGYRCC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	172, 387, 596
BssMI	GATC	5 cut(s)	138, 181, 279, 286, 568
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	244, 448
Bst6I	CTCTTC	2 cut(s)	49, 232
BstC8I	GCNNGC	3 cut(s)	152, 266, 424
BstDEI	CTNAG	2 cut(s)	11, 76
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	5 cut(s)	141, 184, 282, 289, 571
BstMAI	GTCTC	2 cut(s)	74, 152
BstMBI	GATC	5 cut(s)	138, 181, 279, 286, 568
BstMCI	CGRYCG	2 cut(s)	525, 596
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 609
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	3 cut(s)	172, 540, 595
BstV2I	GAAGAC	2 cut(s)	31, 369
BsuRI	GGCC	1 cut(s)	116
BtrI	CACGTC	2 cut(s)	492, 697
BtsCI	GGATG	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	2 cut(s)	305, 617
Cac8I	GCNNGC	3 cut(s)	152, 266, 424
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	559, 589
Csp6I	GTAC	3 cut(s)	72, 403, 481
CviAII	CATG	3 cut(s)	54, 196, 427
CviQI	GTAC	3 cut(s)	72, 403, 481
DdeI	CTNAG	2 cut(s)	11, 76
DpnI	GATC	5 cut(s)	140, 183, 281, 288, 570
DpnII	GATC	5 cut(s)	138, 181, 279, 286, 568
Eam1104I	CTCTTC	2 cut(s)	49, 232
EarI	CTCTTC	2 cut(s)	49, 232
EciI	GGCGGA	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	559, 589
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	57, 199, 430
FaiI	YATR	5 cut(s)	55, 197, 254, 277, 428
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	3 cut(s)	53, 195, 426
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	604
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	604
GluI	GCNGC	1 cut(s)	604
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	6 cut(s)	155, 174, 333, 521, 577, 596
Hin1II	CATG	3 cut(s)	57, 199, 430
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HpaII	CCGG	6 cut(s)	155, 174, 333, 521, 577, 596
HphI	GGTGA	4 cut(s)	232, 322, 484, 530
Hpy166II	GTNNAC	2 cut(s)	489, 531
Hpy188I	TCNGA	5 cut(s)	14, 138, 186, 324, 559
Hpy188III	TCNNGA	2 cut(s)	231, 640
Hpy8I	GTNNAC	2 cut(s)	489, 531
Hpy99I	CGWCG	3 cut(s)	493, 559, 569
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	244, 448
HpyCH4IV	ACGT	6 cut(s)	371, 491, 509, 533, 696, 708
HpyCH4V	TGCA	3 cut(s)	87, 426, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 609
HpyF3I	CTNAG	2 cut(s)	11, 76
HpySE526I	ACGT	6 cut(s)	371, 491, 509, 533, 696, 708
Hsp92II	CATG	3 cut(s)	57, 199, 430
Kzo9I	GATC	5 cut(s)	138, 181, 279, 286, 568
LmnI	GCTCC	3 cut(s)	318, 389, 671
MaeII	ACGT	6 cut(s)	371, 491, 509, 533, 696, 708
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	5 cut(s)	140, 183, 281, 288, 570
MboI	GATC	5 cut(s)	138, 181, 279, 286, 568
MboII	GAAGA	6 cut(s)	16, 31, 36, 212, 219, 374
MluCI	AATT	2 cut(s)	460, 646
MmeI	TCCRAC	2 cut(s)	462, 537
MnlI	CCTC	9 cut(s)	106, 235, 311, 326, 338, 462, 538, 572, 677
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	3 cut(s)	60, 378, 675
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	6 cut(s)	155, 174, 333, 521, 577, 596
MspR9I	CCNGG	3 cut(s)	174, 542, 597
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	2 cut(s)	108, 609
NciI	CCSGG	2 cut(s)	174, 597
NdeII	GATC	5 cut(s)	138, 181, 279, 286, 568
NlaIII	CATG	3 cut(s)	57, 199, 430
NlaIV	GGNNCC	4 cut(s)	314, 436, 590, 607
NmuCI	GTSAC	1 cut(s)	191
PaqCI	CACCTGC	2 cut(s)	305, 617
PdmI	GAANNNNTTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	605
Psp1406I	AACGTT	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	4 cut(s)	314, 436, 590, 607
PspPI	GGNCC	2 cut(s)	559, 589
RsaI	GTAC	3 cut(s)	73, 404, 482
RsaNI	GTAC	3 cut(s)	72, 403, 481
RseI	CAYNNNNRTG	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	60, 378, 675
SatI	GCNGC	1 cut(s)	604
Sau3AI	GATC	5 cut(s)	138, 181, 279, 286, 568
Sau96I	GGNCC	2 cut(s)	559, 589
ScrFI	CCNGG	3 cut(s)	174, 542, 597
SinI	GGWCC	2 cut(s)	559, 589
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	2 cut(s)	460, 646
SsiI	CCGC	2 cut(s)	603, 624
StyD4I	CCNGG	3 cut(s)	172, 540, 595
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	244, 448
TaiI	ACGT	6 cut(s)	374, 494, 512, 536, 699, 711
TaqI	TCGA	4 cut(s)	141, 488, 525, 564
TaqII	GACCGA	1 cut(s)	606
TasI	AATT	2 cut(s)	460, 646
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	60, 378, 675
Tru9I	TTAA	3 cut(s)	60, 378, 675
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	17, 36
TspGWI	ACGGA	2 cut(s)	113, 330
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	559, 589
XmiI	GTMKAC	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.