Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Forward (+)

52668218 .. 52669325

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGCAGGCAACCTTGTTGTGACAAGCTTGGCGTCAAGAAAGGTCCATGGACAGCCGAGGAAGACAAGAAACTAGTGAACTTCATCCTCACTCATGGCCAATGCTGCTGGCGCGCCGTCCCCAAGCTCGCGGGTCTGCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGACTAATTATCTTCGGCCTGACTTGAAGCGAGGGCTACTCAATGAAGCTGAGGAGCAGCTTGTTATTGACCTCCATGCTAGTCTTGGCAATAGGTGGTCTAAAATTGCAGCAAGACTGCCTGGAAGAACAGACAATGAGATCAAGAATCACTGGAATACACACATCAAGAAAAAACTTATCAAGATGGGGATTGATCCAATTACTCATGCGCCTCTCCAAAAACAAGTCACTACAACCCCACAAGAAACGCCTTGTGAAGCCAATATTCAACAAAGTATGAACATCCCGGAGCATGGAGTCTCTGGCAACGAAAATGGCAGCTCTGCAACTGAGAATTCCTCAAGCAATGAAGCTCAGTCACTAATTGAGGTCAATGCCAATGGTGACGATGACCCTTTGGTGAGATACATATTATCCGATTATTCCGATACATTTCTCCAGGATTGGTCATGGAATTTTCCGGTTGTGGAAGACAATTACAGTGATCTTGGCTTGTCTTCAACTTCATCAGAGGATAGCTCAACTTGGTTTATGGACTGCAAGGATTTTGGGGTTGAGGATTTCGAGCTTGGAAATTGTATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

252

Amino Acids

28.36

Weight (kDa)

5.43

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.4e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 111	2.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 115	6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	114, 131
AciI	CCGC	5 cut(s)	131, 142, 147, 160, 166
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	505, 625
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	196, 440, 672
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	289, 609
AluBI	AGCT	9 cut(s)	28, 127, 156, 218, 229, 492, 524, 690, 739
AluI	AGCT	9 cut(s)	28, 127, 156, 218, 229, 492, 524, 690, 739
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	97, 185
ApeKI	GCWGC	6 cut(s)	105, 144, 156, 226, 278, 489
ApoI	RAATTY	2 cut(s)	505, 625
AscI	GGCGCGCC	1 cut(s)	112
AspLEI	GCGC	4 cut(s)	114, 116, 141, 382
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	2 cut(s)	566, 583
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	3 cut(s)	69, 648, 660
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	291, 611
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	475
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	2 cut(s)	74, 249
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
BlsI	GCNGC	9 cut(s)	107, 143, 146, 149, 158, 161, 228, 280, 491
Bme1390I	CCNGG	3 cut(s)	291, 458, 611
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	291, 458, 611
BpiI	GAAGAC	3 cut(s)	69, 648, 660
BplI	GAGNNNNNCTC	6 cut(s)	192, 224, 494, 526, 674, 706
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	47, 57
BsaWI	WCCGGW	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	291, 611
BseDI	CCNNGG	2 cut(s)	47, 57
BseGI	GGATG	2 cut(s)	84, 453
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	3 cut(s)	210, 492, 539
BseNI	ACTGG	1 cut(s)	326
BsePI	GCGCGC	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
Bsh1236I	CGCG	2 cut(s)	114, 131
BshFI	GGCC	2 cut(s)	99, 187
BsiSI	CCGG	2 cut(s)	458, 632
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	99, 187
Bsp143I	GATC	3 cut(s)	309, 364, 655
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	131, 142, 147, 160, 166
BspANI	GGCC	2 cut(s)	99, 187
BspCNI	CTCAG	3 cut(s)	211, 493, 538
BspFNI	CGCG	2 cut(s)	114, 131
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	47, 57
BssHII	GCGCGC	1 cut(s)	112
BssMI	GATC	3 cut(s)	309, 364, 655
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	291, 611
Bst4CI	ACNGT	1 cut(s)	653
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	8, 110, 114, 129
BstDEI	CTNAG	3 cut(s)	219, 501, 525
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	84, 453
BstFNI	CGCG	2 cut(s)	114, 131
BstHHI	GCGC	4 cut(s)	114, 116, 141, 382
BstKTI	GATC	3 cut(s)	312, 367, 658
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	3 cut(s)	309, 364, 655
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 111, 147, 153, 156, 165
BstNI	CCWGG	2 cut(s)	291, 611
BstSCI	CCNGG	3 cut(s)	289, 456, 609
BstUI	CGCG	2 cut(s)	114, 131
BstV1I	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
BstV2I	GAAGAC	3 cut(s)	69, 648, 660
BsuRI	GGCC	2 cut(s)	99, 187
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	84, 453
BtsIMutI	CAGTG	2 cut(s)	319, 658
Cac8I	GCNNGC	4 cut(s)	8, 110, 114, 129
CfoI	GCGC	4 cut(s)	114, 116, 141, 382
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	22
CviAII	CATG	6 cut(s)	48, 95, 245, 377, 464, 621
DdeI	CTNAG	3 cut(s)	219, 501, 525
DpnI	GATC	3 cut(s)	311, 366, 657
DpnII	GATC	3 cut(s)	309, 364, 655
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	289, 609
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	6 cut(s)	51, 98, 248, 380, 467, 624
FaiI	YATR	9 cut(s)	49, 96, 246, 378, 449, 465, 581, 622, 704
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	47, 94, 244, 376, 463, 620
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
FokI	GGATG	2 cut(s)	71, 440
Fsp4HI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
FspBI	CTAG	2 cut(s)	74, 249
GlaI	GCGC	4 cut(s)	113, 115, 140, 381
GluI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	99, 187
HapII	CCGG	2 cut(s)	458, 632
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	4 cut(s)	114, 116, 141, 382
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	51, 98, 248, 380, 467, 624
Hin6I	GCGC	4 cut(s)	112, 114, 139, 380
HinP1I	GCGC	4 cut(s)	112, 114, 139, 380
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	316, 468
HpaII	CCGG	2 cut(s)	458, 632
HphI	GGTGA	2 cut(s)	566, 583
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	589, 598, 682
Hpy188III	TCNNGA	4 cut(s)	37, 313, 337, 352
Hpy8I	GTNNAC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	3 cut(s)	278, 497, 711
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 111, 147, 153, 156, 165
HpyF3I	CTNAG	3 cut(s)	219, 501, 525
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	51, 98, 248, 380, 467, 624
HspAI	GCGC	4 cut(s)	112, 114, 139, 380
Kzo9I	GATC	3 cut(s)	309, 364, 655
LmnI	GCTCC	2 cut(s)	223, 460
Lsp1109I	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
MaeI	CTAG	2 cut(s)	74, 249
MaeIII	GTNAC	4 cut(s)	20, 397, 528, 554
MalI	GATC	3 cut(s)	311, 366, 657
MboI	GATC	3 cut(s)	309, 364, 655
MboII	GAAGA	5 cut(s)	74, 173, 306, 653, 660
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	9 cut(s)	175, 273, 369, 505, 534, 625, 646, 745, 754
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	757
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	144, 168
MspI	CCGG	2 cut(s)	458, 632
MspR9I	CCNGG	3 cut(s)	291, 458, 611
MvaI	CCWGG	2 cut(s)	291, 611
MvnI	CGCG	2 cut(s)	114, 131
MwoI	GCNNNNNNNGC	6 cut(s)	105, 111, 147, 153, 156, 165
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	309, 364, 655
NlaIII	CATG	6 cut(s)	51, 98, 248, 380, 467, 624
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	4 cut(s)	20, 397, 528, 554
PalAI	GGCGCGCC	1 cut(s)	112
PauI	GCGCGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	316
PfoI	TCCNGGA	2 cut(s)	456, 609
PkrI	GCNGC	9 cut(s)	107, 143, 146, 149, 158, 161, 228, 280, 491
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	289, 609
PspGI	CCWGG	2 cut(s)	289, 609
PspPI	GGNCC	1 cut(s)	44
PteI	GCGCGC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	757
SatI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
Sau3AI	GATC	3 cut(s)	309, 364, 655
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	3 cut(s)	291, 458, 611
SgsI	GGCGCGCC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	9 cut(s)	175, 273, 369, 505, 534, 625, 646, 745, 754
SsiI	CCGC	5 cut(s)	131, 142, 147, 160, 166
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	74, 249
StyD4I	CCNGG	3 cut(s)	289, 456, 609
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	653
TaqI	TCGA	1 cut(s)	735
TasI	AATT	9 cut(s)	175, 273, 369, 505, 534, 625, 646, 745, 754
TauI	GCSGC	3 cut(s)	144, 150, 162
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	757
Tru9I	TTAA	1 cut(s)	757
TscAI	CASTG	2 cut(s)	326, 658
TseFI	GTSAC	4 cut(s)	20, 397, 528, 554
TseI	GCWGC	6 cut(s)	105, 144, 156, 226, 278, 489
Tsp45I	GTSAC	4 cut(s)	20, 397, 528, 554
TspDTI	ATGAA	5 cut(s)	73, 228, 464, 534, 666
TspRI	CASTG	2 cut(s)	326, 658
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	505, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	74, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.