Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028225.1

Orthogroup ID

OG0008674

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 454

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 413 bp

gaatcccaaggggtgcacgctatgctattacagtgggcgttggagtgccagcaattatgtgccttatagggctattatgttgcatgtgtggcagactcaagcctttaacaatgcgacgcacatcactcccagaatttaattcaattggggctccgcagcctggaatcgtaaagggactcgatgtggcaacacttgcggcttacccgaaaatagtcctcagtgaaagccggcgtctaccgcagccggatgatagcacttgttcgatatgcttgtccgagtaccggccgaaggagatactgaagaccatacccgaatgccaacattgcttccatgctaattgcatcgatgaatggcttaaattgaatgctacttgccccatttgtagaaaatctccacaaggactcagtcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

136

Amino Acids

14.87

Weight (kDa)

8.83

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53110
fragaria_vesca	FvH4_7g31800 FvH4_7g31800
malus_domestica	MD01G1219300.v1.1 MD07G1290600.v1.1 MD07G1290700.v1.1
prunus_persica	Prupe.2G312000_v2.0.a1
pyrus_communis	pycom01g22910 pycom07g26340
rosa_chinensis	RchiOBHm_Chr1g0381031
rosa_laevigata	RLG00000026251
rosa_multiflora	Rmu_sc0004494.1_g000003 Rmu_sc0012952.1_g000007 Rmu_sc0028225.1_g000001 Rmu_sc0035898.1_g000001 Rmu_sc0039326.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278840
rosa_rugosa	Rorug01G0426600
rosa_samantha	Rh1AG450400 Rh1BG406400 Rh1CG420400 Rh1DG436900
rosa_wichuraiana	Rw1G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	3 cut(s)	154, 196, 238
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	3 cut(s)	160, 281, 288
AgsI	TTSAA	2 cut(s)	143, 363
AjnI	CCWGG	1 cut(s)	159
Alw21I	GWGCWC	1 cut(s)	18
Alw44I	GTGCAC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	156, 240
ApoI	RAATTY	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	168, 252
BciT130I	CCWGG	1 cut(s)	161
BisI	GCNGC	3 cut(s)	157, 197, 241
BlsI	GCNGC	3 cut(s)	158, 198, 242
Bme1390I	CCNGG	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	82
Bsa29I	ATCGAT	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 281, 288
Bse118I	RCCGGY	2 cut(s)	227, 281
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	160, 281, 288
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	18
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	168, 252
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	228, 244, 282
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	160, 281, 288
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	2 cut(s)	319, 369
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	18, 153
BspACI	CCGC	3 cut(s)	154, 196, 238
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	230
BspDI	ATCGAT	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	227, 281
BssAI	RCCGGY	2 cut(s)	227, 281
BssECI	CCNNGG	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	2 cut(s)	22, 193
BstC8I	GCNNGC	3 cut(s)	18, 50, 229
BstDEI	CTNAG	2 cut(s)	217, 403
BstF5I	GGATG	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 89, 193, 237, 323
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	168, 252
BstV2I	GAAGAC	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	38, 225
Cac8I	GCNNGC	3 cut(s)	18, 50, 229
Cfr10I	RCCGGY	2 cut(s)	227, 281
ClaI	ATCGAT	1 cut(s)	344
CseI	GACGC	2 cut(s)	125, 220
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	84, 331
CviJI	RGCY	9 cut(s)	72, 102, 151, 159, 199, 227, 243, 285, 354
CviKI_1	RGCY	9 cut(s)	72, 102, 151, 159, 199, 227, 243, 285, 354
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	217, 403
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	2 cut(s)	87, 334
FaiI	YATR	8 cut(s)	23, 58, 67, 78, 85, 267, 307, 332
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	2 cut(s)	83, 330
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	157, 197, 241
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	157, 197, 241
GluI	GCNGC	3 cut(s)	157, 197, 241
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	3 cut(s)	228, 244, 282
HgaI	GACGC	2 cut(s)	125, 220
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	87, 334
HinfI	GANTC	5 cut(s)	2, 95, 164, 176, 401
HpaII	CCGG	3 cut(s)	228, 244, 282
Hpy166II	GTNNAC	2 cut(s)	16, 235
Hpy188I	TCNGA	1 cut(s)	276
Hpy8I	GTNNAC	2 cut(s)	16, 235
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	16, 83, 341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 89, 193, 237, 323
HpyF3I	CTNAG	2 cut(s)	217, 403
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	87, 334
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	62, 143, 146, 173, 241, 257, 295
Lsp1109I	GCAGC	2 cut(s)	168, 252
LweI	GCATC	1 cut(s)	350
MboII	GAAGA	1 cut(s)	312
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	18, 153
MluCI	AATT	6 cut(s)	53, 133, 138, 143, 336, 358
MlyI	GAGTC	3 cut(s)	89, 170, 395
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	3 cut(s)	106, 137, 356
MspI	CCGG	3 cut(s)	228, 244, 282
MspR9I	CCNGG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	2 cut(s)	319, 369
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	22, 89, 193, 237, 323
NaeI	GCCGGC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	87, 334
NlaIV	GGNNCC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	87
PctI	GAATGC	2 cut(s)	319, 369
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	2, 164
PflFI	GACNNNGTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	158, 198, 242
PleI	GAGTC	3 cut(s)	89, 170, 395
PpsI	GAGTC	3 cut(s)	89, 170, 395
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	106, 137, 356
SatI	GCNGC	3 cut(s)	157, 197, 241
SchI	GAGTC	3 cut(s)	89, 170, 395
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	18, 153
SfaNI	GCATC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	6 cut(s)	53, 133, 138, 143, 336, 358
SsiI	CCGC	3 cut(s)	154, 196, 238
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	179, 262, 344
TasI	AATT	6 cut(s)	53, 133, 138, 143, 336, 358
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	2, 164
Tru1I	TTAA	3 cut(s)	106, 137, 356
Tru9I	TTAA	3 cut(s)	106, 137, 356
TscAI	CASTG	2 cut(s)	38, 225
TseI	GCWGC	2 cut(s)	156, 240
TspDTI	ATGAA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	38, 225
Tth111I	GACNNNGTC	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.