Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Reverse (-)

21723235 .. 21724701

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCAAATCTCTTCACCGTTTTTCTCTGTAAACCTCCGCCGTGAGCCTAGATCTTTAGTAACAGTACACTGCTCCGCAGGAGAAAACAGAGAAAATGGTGAAGGTGTAAAGAAGAGTCTCTTTCCTCTTAAGGAGCTTGGATCTATCGCTTGCGCAGCTCTCTGTGCTTGCACTCTTACAATAGCTTCTCCTGTTATTGCTGCTAACCAGAGACTTCCTCCGTTATCAACAGAACCAGACCGGTGTGAAAAAGCATTTGTTGGTAACACGATAGGTCAAGCAAATGGTGTCTATGACAAACCACTGGATCTTAGGTTCTGTGATTACACAAATGATCAAACTAATCTCAAAGGCAAGACTCTCTCTGCAGCCTTGATGGTTGGGGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCAAAAGCTTATGCTGTAGAAGCAAGCTTTAAAGGGGTGAATTTCACTAATGCTGTTATCGATCGGGTGAATTTCGGGAAATCGAATCTGAAAGGTGCGGTGTTTAGGAACACGGTATTATCCGGTTCGACATTTGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGTTACATAGACCTTCAGAAAATATGTAGGAATGAGTCCATAAACGAAGAAGGAAGACTTGTGTTGGGATGCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

236

Amino Acids

25.64

Weight (kDa)

5.98

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	158 - 217	1.4e-08	Pentapeptide repeat region
Pentapeptide_3	PF13576	171 - 208	5.3e-06	Pentapeptide repeats (9 copies)
Pentapeptide	PF00805	172 - 207	1.2e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	184
AciI	CCGC	3 cut(s)	67, 105, 551
AclWI	GGATC	2 cut(s)	178, 345
AcsI	RAATTY	3 cut(s)	493, 523, 598
AcuI	CTGAAG	2 cut(s)	462, 632
AfaI	GTAC	1 cut(s)	96
AflII	CTTAAG	1 cut(s)	158
AgeI	ACCGGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	20
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	5 cut(s)	166, 188, 215, 461, 480
AluI	AGCT	5 cut(s)	166, 188, 215, 461, 480
Alw26I	GTCTC	2 cut(s)	152, 235
AlwI	GGATC	2 cut(s)	178, 345
ApeKI	GCWGC	3 cut(s)	185, 230, 398
ApoI	RAATTY	3 cut(s)	493, 523, 598
AsiGI	ACCGGT	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	36, 140, 502, 532
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	694
BbvI	GCAGC	3 cut(s)	197, 217, 410
BccI	CCATC	2 cut(s)	400, 419
BceAI	ACGGC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	152, 235
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	2 cut(s)	396, 468
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	3 cut(s)	186, 231, 399
BlsI	GCNGC	3 cut(s)	187, 232, 400
BmsI	GCATC	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	694
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bsa29I	ATCGAT	1 cut(s)	513
BsaWI	WCCGGW	2 cut(s)	270, 575
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	513
BseGI	GGATG	2 cut(s)	613, 707
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	3 cut(s)	197, 217, 410
BsgI	GTGCAG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	517
BshTI	ACCGGT	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	271, 576
BsmAI	GTCTC	2 cut(s)	152, 235
Bsp143I	GATC	5 cut(s)	80, 170, 337, 364, 514
BspACI	CCGC	3 cut(s)	67, 105, 551
BspDI	ATCGAT	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	178, 345
BspTI	CTTAAG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	270
BssMI	GATC	5 cut(s)	80, 170, 337, 364, 514
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	48, 94, 568
Bst6I	CTCTTC	2 cut(s)	46, 137
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	181, 199, 478
BstDEI	CTNAG	2 cut(s)	341, 417
BstF5I	GGATG	2 cut(s)	613, 707
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	83, 173, 340, 367, 517
BstMAI	GTCTC	2 cut(s)	152, 235
BstMBI	GATC	5 cut(s)	80, 170, 337, 364, 514
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 194, 473
BstSFI	CTRYAG	2 cut(s)	396, 468
BstV1I	GCAGC	3 cut(s)	197, 217, 410
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	3 cut(s)	80, 170, 337
BstYI	RGATCY	3 cut(s)	80, 170, 337
Bsu15I	ATCGAT	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	613, 707
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 332
Cac8I	GCNNGC	3 cut(s)	181, 199, 478
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	95
CspAI	ACCGGT	1 cut(s)	270
CviJI	RGCY	9 cut(s)	5, 76, 166, 188, 215, 401, 416, 461, 480
CviKI_1	RGCY	9 cut(s)	5, 76, 166, 188, 215, 401, 416, 461, 480
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	341, 417
DpnI	GATC	5 cut(s)	82, 172, 339, 366, 516
DpnII	GATC	5 cut(s)	80, 170, 337, 364, 514
DraI	TTTAAA	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	46, 137
EarI	CTCTTC	2 cut(s)	46, 137
EciI	GGCGGA	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	462, 632
FaiI	YATR	7 cut(s)	324, 437, 452, 465, 641, 658, 674
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 675, 707
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	186, 231, 399
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	3 cut(s)	186, 231, 399
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	184
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	186, 231, 399
HapII	CCGG	2 cut(s)	271, 576
HhaI	GCGC	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	2 cut(s)	459, 478
HinfI	GANTC	5 cut(s)	31, 145, 388, 538, 668
HpaII	CCGG	2 cut(s)	271, 576
HphI	GGTGA	4 cut(s)	36, 140, 502, 532
Hpy166II	GTNNAC	2 cut(s)	61, 97
Hpy188I	TCNGA	2 cut(s)	543, 651
Hpy188III	TCNNGA	2 cut(s)	25, 529
Hpy8I	GTNNAC	2 cut(s)	61, 97
HpyAV	CCTTC	3 cut(s)	125, 656, 677
HpyCH4III	ACNGT	3 cut(s)	48, 94, 568
HpyCH4V	TGCA	3 cut(s)	201, 398, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 194, 473
HpyF3I	CTNAG	2 cut(s)	341, 417
HspAI	GCGC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	80, 170, 337, 364, 514
LmnI	GCTCC	2 cut(s)	107, 163
LpnPI	CCDG	8 cut(s)	27, 93, 234, 251, 279, 284, 320, 589
Lsp1109I	GCAGC	3 cut(s)	197, 217, 410
LweI	GCATC	1 cut(s)	692
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	88, 293, 635
MalI	GATC	5 cut(s)	82, 172, 339, 366, 516
MboI	GATC	5 cut(s)	80, 170, 337, 364, 514
MboII	GAAGA	4 cut(s)	33, 154, 692, 699
MflI	RGATCY	3 cut(s)	80, 170, 337
MluCI	AATT	4 cut(s)	20, 493, 523, 598
MlyI	GAGTC	3 cut(s)	154, 382, 677
MnlI	CCTC	8 cut(s)	21, 74, 165, 258, 583, 586, 598, 613
MseI	TTAA	2 cut(s)	159, 483
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	2 cut(s)	271, 576
MwoI	GCNNNNNNNGC	3 cut(s)	185, 194, 473
NdeII	GATC	5 cut(s)	80, 170, 337, 364, 514
NsbI	TGCGCA	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	31, 538
PinAI	ACCGGT	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	187, 232, 400
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	3 cut(s)	153, 382, 676
PpsI	GAGTC	3 cut(s)	153, 382, 676
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	80, 170, 337
PvuI	CGATCG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	159, 483
SatI	GCNGC	3 cut(s)	186, 231, 399
Sau3AI	GATC	5 cut(s)	80, 170, 337, 364, 514
SchI	GAGTC	3 cut(s)	154, 382, 677
SfaNI	GCATC	1 cut(s)	692
SfcI	CTRYAG	2 cut(s)	396, 468
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	20, 493, 523, 598
SsiI	CCGC	3 cut(s)	67, 105, 551
SspMI	CTAG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	48, 94, 568
TaqI	TCGA	3 cut(s)	513, 536, 581
TasI	AATT	4 cut(s)	20, 493, 523, 598
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	31, 538
Tru1I	TTAA	2 cut(s)	159, 483
Tru9I	TTAA	2 cut(s)	159, 483
TscAI	CASTG	2 cut(s)	104, 339
TseI	GCWGC	3 cut(s)	185, 230, 398
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	104, 339
Vha464I	CTTAAG	1 cut(s)	158
XapI	RAATTY	3 cut(s)	493, 523, 598
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.