Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Reverse (-)

35550404 .. 35553101

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1294700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTGCTTCACTTTCTTCATCGATTCTTCTGTCTCGAAACGGCGTTTCTCTCCAATTCTCCCAGACGAAACGCCCGCAATTCCACTCGCCGACGCGCGTATTTTGCTCCGCTTCTAGGGATGGTCATGAAACAAAGGAAGATTTGAGTCAGTGGAAGCAAGTTAAGAATGTAGCTTGTGGGGTTCTTGCTGTTTGGGCCTTGAGTACCGCTGCCTCACCTGTAATTGCTGCTGGTCAGAGGTTGCCTCCATTGTCTACTGATCCAAAGCGGTGTGAGGTTGCATTTGTTGGAAACACGATAGGTCAGGCAAATGGAGTTTACGACAAGGCAATTGATCTCCGCTTCTGTGATTACACAAACGAGAAGTCCAATCTTAAGGGGAAGAGTCTTGCAGCAGCACTCATGTCCGGAGCCAAATTTGATGGCGCAGACATGACAGAAGTTGTGATGTCAAAGGCTTATGCTGCAGGAGCTAGCTTCAAGGGTACAAACTTCTCAAACGCAGTTCTAGACCGGGTTAACTTTGAGAAAGCGAATCTGCAAGGAGCTTTGTTTATTAACACTGTCTTATCAGGTTCCACCTTCAACGAAGCAAACCTTGACGGTGTATTTTTCGAGGATACCATTATAGGGTACATTGATCTTCAGAAAATTTGTAGAAATACAACCATCAATGAGGAAGGAAGAGCTACCCTAGGGTGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

237

Amino Acids

25.37

Weight (kDa)

8.51

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	152 - 186	8.9e-08	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	160 - 218	4.4e-08	Pentapeptide repeat region
Pentapeptide	PF00805	175 - 209	7e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	2 cut(s)	97, 99
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	5 cut(s)	77, 111, 210, 271, 343
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	419, 654
AcuI	CTGAAG	1 cut(s)	632
AfaI	GTAC	3 cut(s)	208, 490, 638
AfiI	CCNNNNNNNGG	2 cut(s)	117, 633
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	484, 589
AluBI	AGCT	5 cut(s)	176, 476, 480, 551, 692
AluI	AGCT	5 cut(s)	176, 476, 480, 551, 692
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	6 cut(s)	5, 212, 230, 395, 398, 467
ApoI	RAATTY	2 cut(s)	419, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspA2I	CCTAGG	1 cut(s)	697
AspLEI	GCGC	2 cut(s)	99, 431
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	210
AsuNHI	GCTAGC	1 cut(s)	476
AvrII	CCTAGG	1 cut(s)	697
BbvI	GCAGC	5 cut(s)	199, 217, 407, 410, 454
BccI	CCATC	3 cut(s)	116, 419, 680
BceAI	ACGGC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	4 cut(s)	117, 477, 512, 698
BfmI	CTRYAG	1 cut(s)	468
BfrI	CTTAAG	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	616
BisI	GCNGC	6 cut(s)	6, 213, 231, 396, 399, 468
BlnI	CCTAGG	1 cut(s)	697
BlsI	GCNGC	6 cut(s)	7, 214, 232, 397, 400, 469
Bme1390I	CCNGG	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	415, 580
BmrFI	CCNGG	1 cut(s)	518
BmtI	GCTAGC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	697
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 633
BseAI	TCCGGA	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	697
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	117, 633
BseXI	GCAGC	5 cut(s)	199, 217, 407, 410, 454
Bsh1236I	CGCG	2 cut(s)	97, 99
BshFI	GGCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	411, 517
BslI	CCNNNNNNNGG	2 cut(s)	117, 633
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	262, 337, 643
BspACI	CCGC	5 cut(s)	77, 111, 210, 271, 343
BspANI	GGCC	1 cut(s)	200
BspDI	ATCGAT	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	2 cut(s)	97, 99
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	415, 580
BspMAI	CTGCAG	1 cut(s)	472
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	682
BspTI	CTTAAG	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	697
BssMI	GATC	3 cut(s)	262, 337, 643
BssT1I	CCWWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	568, 608
Bst6I	CTCTTC	2 cut(s)	380, 682
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	77, 478
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	2 cut(s)	97, 99
BstHHI	GCGC	2 cut(s)	99, 431
BstKTI	GATC	3 cut(s)	265, 340, 646
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	3 cut(s)	262, 337, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 197, 467, 473
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	2 cut(s)	97, 99
BstV1I	GCAGC	5 cut(s)	199, 217, 407, 410, 454
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	158, 564
Cac8I	GCNNGC	2 cut(s)	77, 478
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	2 cut(s)	99, 431
Cfr13I	GGNCC	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	207, 489, 637
CviAII	CATG	3 cut(s)	128, 406, 436
CviJI	RGCY	9 cut(s)	5, 176, 200, 416, 461, 476, 480, 551, 692
CviKI_1	RGCY	9 cut(s)	5, 176, 200, 416, 461, 476, 480, 551, 692
CviQI	GTAC	3 cut(s)	207, 489, 637
DpnI	GATC	3 cut(s)	264, 339, 645
DpnII	GATC	3 cut(s)	262, 337, 643
Eam1104I	CTCTTC	2 cut(s)	380, 682
EarI	CTCTTC	2 cut(s)	380, 682
Eco130I	CCWWGG	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	697
FaeI	CATG	3 cut(s)	131, 409, 439
FaiI	YATR	5 cut(s)	129, 407, 437, 465, 632
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	3 cut(s)	127, 405, 435
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	6 cut(s)	6, 213, 231, 396, 399, 468
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	6 cut(s)	6, 213, 231, 396, 399, 468
FspBI	CTAG	4 cut(s)	117, 477, 512, 698
GlaI	GCGC	2 cut(s)	98, 430
GluI	GCNGC	6 cut(s)	6, 213, 231, 396, 399, 468
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	411, 517
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	99, 431
Hin1II	CATG	3 cut(s)	131, 409, 439
Hin6I	GCGC	2 cut(s)	97, 429
HinP1I	GCGC	2 cut(s)	97, 429
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	4 cut(s)	25, 148, 388, 538
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	411, 517
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	258, 322, 523
Hpy188I	TCNGA	2 cut(s)	240, 651
Hpy188III	TCNNGA	4 cut(s)	36, 128, 411, 512
Hpy8I	GTNNAC	3 cut(s)	258, 322, 523
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	595, 677
HpyCH4III	ACNGT	2 cut(s)	568, 608
HpyCH4V	TGCA	4 cut(s)	284, 395, 470, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 197, 467, 473
Hsp92II	CATG	3 cut(s)	131, 409, 439
HspAI	GCGC	2 cut(s)	97, 429
Kpn2I	TCCGGA	1 cut(s)	410
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	262, 337, 643
LguI	GCTCTTC	1 cut(s)	682
LmnI	GCTCC	4 cut(s)	113, 413, 473, 548
LpnPI	CCDG	8 cut(s)	77, 219, 234, 293, 424, 456, 530, 561
Lsp1109I	GCAGC	5 cut(s)	199, 217, 407, 410, 454
MaeI	CTAG	4 cut(s)	117, 477, 512, 698
MalI	GATC	3 cut(s)	264, 339, 645
MboI	GATC	3 cut(s)	262, 337, 643
MboII	GAAGA	6 cut(s)	9, 20, 152, 397, 638, 699
MfeI	CAATTG	1 cut(s)	333
MluCI	AATT	6 cut(s)	56, 80, 225, 333, 419, 654
MlyI	GAGTC	2 cut(s)	157, 397
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	6 cut(s)	226, 234, 258, 271, 613, 673
MroI	TCCGGA	1 cut(s)	410
MseI	TTAA	4 cut(s)	165, 378, 522, 561
MspA1I	CMGCKG	1 cut(s)	212
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	2 cut(s)	411, 517
MspR9I	CCNGG	1 cut(s)	518
MunI	CAATTG	1 cut(s)	333
MvnI	CGCG	2 cut(s)	97, 99
MwoI	GCNNNNNNNGC	4 cut(s)	105, 197, 467, 473
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	3 cut(s)	262, 337, 643
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	3 cut(s)	131, 409, 439
NlaIV	GGNNCC	2 cut(s)	415, 580
PagI	TCATGA	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	25, 538
PkrI	GCNGC	6 cut(s)	7, 214, 232, 397, 400, 469
PleI	GAGTC	2 cut(s)	156, 396
PpsI	GAGTC	2 cut(s)	156, 396
PspN4I	GGNNCC	2 cut(s)	415, 580
PspPI	GGNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	472
RsaI	GTAC	3 cut(s)	208, 490, 638
RsaNI	GTAC	3 cut(s)	207, 489, 637
SapI	GCTCTTC	1 cut(s)	682
SaqAI	TTAA	4 cut(s)	165, 378, 522, 561
SatI	GCNGC	6 cut(s)	6, 213, 231, 396, 399, 468
Sau3AI	GATC	3 cut(s)	262, 337, 643
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	2 cut(s)	157, 397
ScrFI	CCNGG	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	202, 377
SmoI	CTYRAG	2 cut(s)	202, 377
Sse9I	AATT	6 cut(s)	56, 80, 225, 333, 419, 654
SsiI	CCGC	5 cut(s)	77, 111, 210, 271, 343
SspMI	CTAG	4 cut(s)	117, 477, 512, 698
StyD4I	CCNGG	1 cut(s)	516
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	568, 608
TaqI	TCGA	4 cut(s)	23, 37, 618, 706
TasI	AATT	6 cut(s)	56, 80, 225, 333, 419, 654
TfiI	GAWTC	2 cut(s)	25, 538
Tru1I	TTAA	4 cut(s)	165, 378, 522, 561
Tru9I	TTAA	4 cut(s)	165, 378, 522, 561
TscAI	CASTG	2 cut(s)	158, 571
TseI	GCWGC	6 cut(s)	5, 212, 230, 395, 398, 467
TspDTI	ATGAA	2 cut(s)	9, 144
TspRI	CASTG	2 cut(s)	158, 571
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	419, 654
XbaI	TCTAGA	1 cut(s)	511
XmaJI	CCTAGG	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	4 cut(s)	117, 477, 512, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.