Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Forward (+)

1471118 .. 1472927

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGCTTCTCTTTCAATTCCATTGTCGACCCGGTTCTCTCCAGCAAAACATCATCGTTTTAATGCCTTAGAGTTCCGCTCACCTCTGCGTGTTAGTTGCTCTGCTTCTAGGGATGGTCCTGAATTAGAGGGAAAGTTACCTCAGTTGAAGCAGCTAAAGAATGTAGCTTGTGGCATTCTTGCTGTTTGGGCTGTAACTACTGCCTCACCAGTAATTGCTGCTAATCAGAGGCTGCCTCCACTGTCAACTGACCCAAAAAGATGTGAGCTTGCATTCGTTGGTAACACGATAGGTCAAGCAAATGGAGTTTATGACAAGGCAATTGATCTCCGCTTCTGTGATTTTACAAATGAAAAGGCCAACCTGAAGGGGAAGAGTCTTGCAGCAGCACTCATGTCTGAGGCAAAGTTTGATGGTGCAGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCTGCAGGAGCTAGCTTCAAGGGCACAAACTTCTCAAATGCAGTTCTAGACAGGGTTAACTTTGAGAAAGCTAATCTACAAGGAGCTTTATTTATAAACACTGTATTATCAGGCTCCACTTTCAATGATGCACAACTTGATGGTGCAGTGTTTGAGGACACCATTATAGGATACATTGATCTTCAGAAACTTTGTAGAAATACAAGTATCAATGAAGAAGGAAGAGATGTTCTGGGGTGCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

233

Amino Acids

25.08

Weight (kDa)

8.19

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	148 - 183	6.4e-08	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	157 - 213	4.1e-07	Pentapeptide repeat region
Pentapeptide	PF00805	167 - 205	6.1e-09	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	693
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	29
AciI	CCGC	2 cut(s)	79, 334
AcuI	CTGAAG	2 cut(s)	389, 623
AgsI	TTSAA	4 cut(s)	18, 151, 475, 580
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	7 cut(s)	157, 170, 271, 467, 471, 527, 542
AluI	AGCT	7 cut(s)	157, 170, 271, 467, 471, 527, 542
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	7 cut(s)	5, 154, 221, 235, 386, 389, 458
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	75, 201
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	693
BbvI	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
BccI	CCATC	3 cut(s)	110, 410, 590
BciVI	GTATCC	1 cut(s)	620
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	3 cut(s)	111, 468, 503
BfmI	CTRYAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
BlsI	GCNGC	7 cut(s)	7, 156, 223, 237, 388, 391, 460
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	571, 695
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	574
BmtI	GCTAGC	1 cut(s)	471
BplI	GAGNNNNNCTC	4 cut(s)	65, 97, 223, 255
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	158, 393
BseNI	ACTGG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
BsgI	GTGCAG	2 cut(s)	441, 621
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	177, 275
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	328, 634
BspACI	CCGC	2 cut(s)	79, 334
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	157, 394
BspLI	GGNNCC	2 cut(s)	571, 695
BspMAI	CTGCAG	1 cut(s)	463
BspOI	GCTAGC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	693
BsrBI	CCGCTC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	328, 634
Bst4CI	ACNGT	2 cut(s)	246, 559
Bst6I	CTCTTC	2 cut(s)	371, 673
BstC8I	GCNNGC	2 cut(s)	273, 469
BstDEI	CTNAG	3 cut(s)	70, 144, 402
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	331, 637
BstMBI	GATC	2 cut(s)	328, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 458, 464, 477
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	242, 555, 609
Cac8I	GCNNGC	2 cut(s)	273, 469
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	2 cut(s)	397, 427
DdeI	CTNAG	3 cut(s)	70, 144, 402
DpnI	GATC	2 cut(s)	330, 636
DpnII	GATC	2 cut(s)	328, 634
Eam1104I	CTCTTC	2 cut(s)	371, 673
EarI	CTCTTC	2 cut(s)	371, 673
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	389, 623
FaeI	CATG	2 cut(s)	400, 430
FaiI	YATR	6 cut(s)	315, 398, 428, 456, 551, 623
FatI	CATG	2 cut(s)	396, 426
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
FspBI	CTAG	3 cut(s)	111, 468, 503
GluI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	400, 430
HincII	GTYRAC	3 cut(s)	30, 249, 514
HindII	GTYRAC	3 cut(s)	30, 249, 514
HinfI	GANTC	1 cut(s)	379
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	75, 201
Hpy166II	GTNNAC	3 cut(s)	30, 249, 514
Hpy188I	TCNGA	3 cut(s)	231, 403, 642
Hpy188III	TCNNGA	2 cut(s)	122, 503
Hpy8I	GTNNAC	3 cut(s)	30, 249, 514
HpyAV	CCTTC	2 cut(s)	364, 668
HpyCH4III	ACNGT	2 cut(s)	246, 559
HpyCH4V	TGCA	7 cut(s)	275, 386, 422, 461, 497, 587, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 458, 464, 477
HpyF3I	CTNAG	3 cut(s)	70, 144, 402
Hsp92II	CATG	2 cut(s)	400, 430
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	328, 634
LmnI	GCTCC	3 cut(s)	464, 539, 575
LpnPI	CCDG	9 cut(s)	47, 57, 135, 225, 380, 447, 493, 552, 674
Lsp1109I	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	3 cut(s)	111, 468, 503
MaeIII	GTNAC	3 cut(s)	138, 196, 284
MalI	GATC	2 cut(s)	330, 636
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	2 cut(s)	328, 634
MboII	GAAGA	4 cut(s)	388, 629, 683, 690
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	4 cut(s)	18, 125, 216, 324
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	8 cut(s)	96, 124, 153, 217, 225, 249, 397, 604
MseI	TTAA	2 cut(s)	63, 513
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	2 cut(s)	177, 275
MwoI	GCNNNNNNNGC	4 cut(s)	191, 458, 464, 477
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	328, 634
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	2 cut(s)	400, 430
NlaIV	GGNNCC	2 cut(s)	571, 695
PctI	GAATGC	2 cut(s)	177, 275
PkrI	GCNGC	7 cut(s)	7, 156, 223, 237, 388, 391, 460
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	571, 695
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	63, 513
SatI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
Sau3AI	GATC	2 cut(s)	328, 634
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	4 cut(s)	18, 125, 216, 324
SsiI	CCGC	2 cut(s)	79, 334
SspMI	CTAG	3 cut(s)	111, 468, 503
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	246, 559
TaqI	TCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	18, 125, 216, 324
Tru1I	TTAA	2 cut(s)	63, 513
Tru9I	TTAA	2 cut(s)	63, 513
TscAI	CASTG	3 cut(s)	249, 562, 609
TseI	GCWGC	7 cut(s)	5, 154, 221, 235, 386, 389, 458
TspDTI	ATGAA	2 cut(s)	369, 684
TspRI	CASTG	3 cut(s)	249, 562, 609
VpaK11BI	GGWCC	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	3 cut(s)	111, 468, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.