Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Reverse (-)

23119565 .. 23121677

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTGCTTCTCTATCAATTCCACTGTCGACCCGGTTCTCTCCGGCAAAACGTCATCGTTTAAATGCGCTAGAGCTCCGTTCACCTCTCCGTGTTTGTTGCTCTGCTTCTAGGGATGGTGCTGAATTGGAGGGAAAGTTGCCTCAGTTGAAGAAGCAGCTAAAGAATGTAGCTTGTGGCATTCTGGCTGTTTGGGCTGTAACTACTGCCTCACCTGTTATTGCTGCTAATCAGAGGCTGCCTCCATTGTCAACTGACCCAAAAAGATGTGAGCTTGCGTTTGTTGGTAACACGATAGGTCAAGCAAATGGAGTTTATGACAAGGCAATTGATCTCCGCTTCTGTGATTTCACAAATGAAAAGGCCAACCTGAAGGGGAAGAGTCTTGCAGCAGCACTCATGTCTGAGGCAAAATTTGATGGTGCAGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCTGCAGGAGCTAGCTTCAAGGGTACAGACTTCACAAATGCAGTTCTAGACAGGGTTAACTTTGAGAAAGCCAATCTACAAGGAGCTTTATTTGTGAACACTGTGTTATCAGGCTCCACTTTCGACAATGCACAACTTGAGGGTGCAGTGTTTGAGGACACCATTATAGGATACATTGATCTTCAGAAAATTTGTAGAAATACAACTATCAATGAAGAAGGAAGAGCTGTTCTGGGGTGCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

235

Amino Acids

25.14

Weight (kDa)

8.67

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	134 - 169	1.3e-06	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	149 - 184	1.2e-07	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	158 - 216	4.1e-07	Pentapeptide repeat region
Pentapeptide	PF00805	168 - 206	3.6e-09	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	696
AccI	GTMKAC	1 cut(s)	29
AciI	CCGC	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	413, 648
AcuI	CTGAAG	2 cut(s)	392, 626
AfaI	GTAC	1 cut(s)	484
AgsI	TTSAA	2 cut(s)	151, 478
AloI	GAACNNNNNNTCC	2 cut(s)	672, 704
AluBI	AGCT	8 cut(s)	76, 160, 173, 274, 470, 474, 545, 686
AluI	AGCT	8 cut(s)	76, 160, 173, 274, 470, 474, 545, 686
Alw21I	GWGCWC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	7 cut(s)	5, 157, 224, 238, 389, 392, 461
ApoI	RAATTY	2 cut(s)	413, 648
AspLEI	GCGC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	75, 204
AsuNHI	GCTAGC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	169, 211, 225, 401, 404, 448
BccI	CCATC	2 cut(s)	110, 413
BciVI	GTATCC	1 cut(s)	623
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	4 cut(s)	71, 111, 471, 506
BfmI	CTRYAG	1 cut(s)	462
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	7 cut(s)	6, 158, 225, 239, 390, 393, 462
BlsI	GCNGC	7 cut(s)	7, 159, 226, 240, 391, 394, 463
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	574, 698
BmrFI	CCNGG	1 cut(s)	34
BmtI	GCTAGC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	158, 396
BseXI	GCAGC	6 cut(s)	169, 211, 225, 401, 404, 448
BsgI	GTGCAG	2 cut(s)	444, 624
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	34, 44
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	331, 637
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	2 cut(s)	157, 397
BspLI	GGNNCC	2 cut(s)	574, 698
BspMAI	CTGCAG	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	474
BspQI	GCTCTTC	1 cut(s)	676
BspT107I	GGYRCC	1 cut(s)	696
BssMI	GATC	2 cut(s)	331, 637
Bst4CI	ACNGT	2 cut(s)	27, 562
Bst6I	CTCTTC	2 cut(s)	374, 676
BstC8I	GCNNGC	2 cut(s)	276, 472
BstDEI	CTNAG	2 cut(s)	144, 405
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	334, 640
BstMBI	GATC	2 cut(s)	331, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 461, 467
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	6 cut(s)	169, 211, 225, 401, 404, 448
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	23, 558, 612
Cac8I	GCNNGC	2 cut(s)	276, 472
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	400, 430
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	2 cut(s)	144, 405
DpnI	GATC	2 cut(s)	333, 639
DpnII	GATC	2 cut(s)	331, 637
DraI	TTTAAA	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	374, 676
EarI	CTCTTC	2 cut(s)	374, 676
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	392, 626
EcoICRI	GAGCTC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	2 cut(s)	403, 433
FaiI	YATR	5 cut(s)	318, 401, 431, 459, 626
FatI	CATG	2 cut(s)	399, 429
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	7 cut(s)	6, 158, 225, 239, 390, 393, 462
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	7 cut(s)	6, 158, 225, 239, 390, 393, 462
FspBI	CTAG	4 cut(s)	71, 111, 471, 506
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	7 cut(s)	6, 158, 225, 239, 390, 393, 462
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	2 cut(s)	34, 44
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	403, 433
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	3 cut(s)	30, 252, 517
HindII	GTYRAC	3 cut(s)	30, 252, 517
HinfI	GANTC	1 cut(s)	382
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	2 cut(s)	34, 44
HphI	GGTGA	2 cut(s)	75, 204
Hpy166II	GTNNAC	5 cut(s)	30, 83, 252, 517, 556
Hpy188I	TCNGA	3 cut(s)	234, 406, 645
Hpy188III	TCNNGA	1 cut(s)	506
Hpy8I	GTNNAC	5 cut(s)	30, 83, 252, 517, 556
HpyAV	CCTTC	2 cut(s)	367, 671
HpyCH4III	ACNGT	2 cut(s)	27, 562
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	389, 425, 464, 500, 590, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 461, 467
HpyF3I	CTNAG	2 cut(s)	144, 405
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	403, 433
HspAI	GCGC	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	331, 637
LguI	GCTCTTC	1 cut(s)	676
LmnI	GCTCC	4 cut(s)	81, 467, 542, 578
LpnPI	CCDG	9 cut(s)	47, 57, 170, 228, 383, 450, 496, 555, 677
Lsp1109I	GCAGC	6 cut(s)	169, 211, 225, 401, 404, 448
MaeI	CTAG	4 cut(s)	71, 111, 471, 506
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	199, 287
MalI	GATC	2 cut(s)	333, 639
MboI	GATC	2 cut(s)	331, 637
MboII	GAAGA	5 cut(s)	163, 391, 632, 686, 693
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	5 cut(s)	18, 125, 327, 413, 648
MlyI	GAGTC	1 cut(s)	391
MnlI	CCTC	9 cut(s)	96, 124, 153, 220, 228, 252, 400, 592, 607
MseI	TTAA	2 cut(s)	62, 516
MspI	CCGG	2 cut(s)	34, 44
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	194, 461, 467
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	331, 637
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	2 cut(s)	403, 433
NlaIV	GGNNCC	2 cut(s)	574, 698
PciSI	GCTCTTC	1 cut(s)	676
PctI	GAATGC	1 cut(s)	180
PkrI	GCNGC	7 cut(s)	7, 159, 226, 240, 391, 394, 463
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	574, 698
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	78
SalI	GTCGAC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	62, 516
SatI	GCNGC	7 cut(s)	6, 158, 225, 239, 390, 393, 462
Sau3AI	GATC	2 cut(s)	331, 637
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	5 cut(s)	18, 125, 327, 413, 648
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	4 cut(s)	71, 111, 471, 506
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	27, 562
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	29, 582
TasI	AATT	5 cut(s)	18, 125, 327, 413, 648
Tru1I	TTAA	2 cut(s)	62, 516
Tru9I	TTAA	2 cut(s)	62, 516
TscAI	CASTG	3 cut(s)	30, 565, 612
TseI	GCWGC	7 cut(s)	5, 157, 224, 238, 389, 392, 461
TspDTI	ATGAA	2 cut(s)	372, 687
TspGWI	ACGGA	2 cut(s)	68, 80
TspRI	CASTG	3 cut(s)	30, 565, 612
XapI	RAATTY	2 cut(s)	413, 648
XbaI	TCTAGA	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	4 cut(s)	71, 111, 471, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.