Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Reverse (-)

67296344 .. 67298356

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG453900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGCTTCTCTTTCAATTCCATTGTCGACCAGGTTCTCTCCAGCGAAACGTCATCGTTTTAATGCCTTAGAGTTCCGTTCACCTCTGCGTGTTAGTTGCTCTGCTTCGAGGGATGGTCCTGAATTAGAGGGAAAGTTACCTCAGTTGAAGCAGCTAAAGAATGTAGCTTGTGGCATTCTTGCTGTTTGGGCAGTAACTACTGCTTCACCAGTAATTGCTGCTAATCAGAGGCTGCCTCCATTGTCAACTGACCCAAAAAGATGTGAGCTTGCATTTGTTGGTAACACGATAGGTCAAGCAAATGGAGTTTATGACAAGGCAATTGATCTCCGCTTCTGTGATTTTACAAATGAAAAGGCCAACCTGAAGGGGAAGAGTCTTGCAGCAGCACTCATGTCTGAGGCAAAGTTTGATGGTGCAGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCTGCAGGAGCTAGCTTCAAGGGTACAAACTTCTCGAATGCAGTTCTAGACAGGGTTAACTTTGAGAAAGCTAATCTACAAGGAGCTTTATTTATAAACACTGTATTATCAGGCTCCACTTTCAATGATGCACAACTTGATGGTGCAGTGTTTGAGGACACCATTATAGGATACATTGATCTTCAGAAACTTTGTAGAAATACAAGTATCAACGAAGAAGGAAGAGATGTTCTAGGGTGCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

233

Amino Acids

25.1

Weight (kDa)

8.52

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	148 - 183	6.4e-08	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	157 - 213	4.1e-07	Pentapeptide repeat region
Pentapeptide	PF00805	167 - 205	6.1e-09	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	29
AciI	CCGC	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	389, 623
AfaI	GTAC	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	18, 151, 475, 580
AjnI	CCWGG	1 cut(s)	32
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	7 cut(s)	157, 170, 271, 467, 471, 527, 542
AluI	AGCT	7 cut(s)	157, 170, 271, 467, 471, 527, 542
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	7 cut(s)	5, 154, 221, 235, 386, 389, 458
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	75, 201
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	693
BbvI	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
BccI	CCATC	3 cut(s)	110, 410, 590
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	620
BfaI	CTAG	3 cut(s)	468, 503, 689
BfmI	CTRYAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
BlsI	GCNGC	7 cut(s)	7, 156, 223, 237, 388, 391, 460
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	571, 695
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	574
BmtI	GCTAGC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	158, 393
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
BsgI	GTGCAG	2 cut(s)	441, 621
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	693
BsmI	GAATGC	2 cut(s)	177, 499
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	328, 634
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	157, 394
BspLI	GGNNCC	2 cut(s)	571, 695
BspMAI	CTGCAG	1 cut(s)	463
BspOI	GCTAGC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	328, 634
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	2 cut(s)	371, 673
BstC8I	GCNNGC	2 cut(s)	273, 469
BstDEI	CTNAG	3 cut(s)	70, 144, 402
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	331, 637
BstMBI	GATC	2 cut(s)	328, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 458, 464
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	555, 609
Cac8I	GCNNGC	2 cut(s)	273, 469
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	2 cut(s)	397, 427
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	70, 144, 402
DpnI	GATC	2 cut(s)	330, 636
DpnII	GATC	2 cut(s)	328, 634
Eam1104I	CTCTTC	2 cut(s)	371, 673
EarI	CTCTTC	2 cut(s)	371, 673
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	389, 623
EcoRII	CCWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	400, 430
FaiI	YATR	6 cut(s)	315, 398, 428, 456, 551, 623
FatI	CATG	2 cut(s)	396, 426
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
FspBI	CTAG	3 cut(s)	468, 503, 689
GluI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	400, 430
HincII	GTYRAC	3 cut(s)	30, 249, 514
HindII	GTYRAC	3 cut(s)	30, 249, 514
HinfI	GANTC	1 cut(s)	379
HpaI	GTTAAC	1 cut(s)	514
HphI	GGTGA	2 cut(s)	75, 201
Hpy166II	GTNNAC	4 cut(s)	30, 83, 249, 514
Hpy188I	TCNGA	3 cut(s)	231, 403, 642
Hpy188III	TCNNGA	3 cut(s)	122, 490, 503
Hpy8I	GTNNAC	4 cut(s)	30, 83, 249, 514
HpyAV	CCTTC	2 cut(s)	364, 668
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	275, 386, 422, 461, 497, 587, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 458, 464
HpyF3I	CTNAG	3 cut(s)	70, 144, 402
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	400, 430
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	328, 634
LmnI	GCTCC	3 cut(s)	464, 539, 575
LpnPI	CCDG	9 cut(s)	19, 46, 57, 135, 225, 380, 447, 493, 552
Lsp1109I	GCAGC	6 cut(s)	166, 208, 222, 398, 401, 445
LweI	GCATC	1 cut(s)	574
MabI	ACCWGGT	1 cut(s)	32
MaeI	CTAG	3 cut(s)	468, 503, 689
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	3 cut(s)	138, 196, 284
MalI	GATC	2 cut(s)	330, 636
MboI	GATC	2 cut(s)	328, 634
MboII	GAAGA	4 cut(s)	388, 629, 683, 690
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	4 cut(s)	18, 125, 216, 324
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	8 cut(s)	96, 105, 124, 153, 225, 249, 397, 604
MseI	TTAA	2 cut(s)	63, 513
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	2 cut(s)	177, 499
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	191, 458, 464
NdeII	GATC	2 cut(s)	328, 634
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	2 cut(s)	400, 430
NlaIV	GGNNCC	2 cut(s)	571, 695
PctI	GAATGC	2 cut(s)	177, 499
PkrI	GCNGC	7 cut(s)	7, 156, 223, 237, 388, 391, 460
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	571, 695
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	63, 513
SatI	GCNGC	7 cut(s)	6, 155, 222, 236, 387, 390, 459
Sau3AI	GATC	2 cut(s)	328, 634
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	34
SexAI	ACCWGGT	1 cut(s)	32
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	4 cut(s)	18, 125, 216, 324
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	3 cut(s)	468, 503, 689
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	29, 110, 491
TasI	AATT	4 cut(s)	18, 125, 216, 324
Tru1I	TTAA	2 cut(s)	63, 513
Tru9I	TTAA	2 cut(s)	63, 513
TscAI	CASTG	2 cut(s)	562, 609
TseI	GCWGC	7 cut(s)	5, 154, 221, 235, 386, 389, 458
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	562, 609
VpaK11BI	GGWCC	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	3 cut(s)	468, 503, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.