Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009713.1

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Reverse (-)

925 .. 1492

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ctgtcaactgacccaaaaagatgtgagcttgcatttgttggtaacacgataggtcaagcaaatggagtttatgacaaggcaattgatctccgcttctgtgattttacaaatgaaaaggccaacctgaaggggaagagtcttgcagcagcactcatgtctgaggcaaagtttgatggtgcagacatgacagaagttgtaatgtcaaaggcttatgccgcaggagctagcttcaagggtacagacttctcgaatgcagttctagacagggttaactttgagaaagctaatctacaaggagctttatttataaacactgtattatcaggctccactttcaatgatgcacaacttgatggtgcagtgtttgaggacaccattataggatacattgatcttcagaaactttgtagaaatacaagtatcaacgaagaaggaagagatgttctggggtgccgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

152

Amino Acids

16.38

Weight (kDa)

4.74

Isoelectric Point (pI)

19.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	450
AciI	CCGC	2 cut(s)	91, 216
AcuI	CTGAAG	2 cut(s)	146, 380
AfaI	GTAC	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	232, 337
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	5 cut(s)	28, 224, 228, 284, 299
AluI	AGCT	5 cut(s)	28, 224, 228, 284, 299
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	143, 146
AsuNHI	GCTAGC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	155, 158
BccI	CCATC	2 cut(s)	167, 347
BciVI	GTATCC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	225, 260
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	3 cut(s)	144, 147, 216
BlsI	GCNGC	3 cut(s)	145, 148, 217
BmiI	GGNNCC	2 cut(s)	328, 452
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	155, 158
BsgI	GTGCAG	2 cut(s)	198, 378
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	85, 391
BspACI	CCGC	2 cut(s)	91, 216
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	328, 452
BspOI	GCTAGC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	450
BssMI	GATC	2 cut(s)	85, 391
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	2 cut(s)	128, 430
BstC8I	GCNNGC	2 cut(s)	30, 226
BstDEI	CTNAG	1 cut(s)	159
BstKTI	GATC	2 cut(s)	88, 394
BstMBI	GATC	2 cut(s)	85, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 221
BstV1I	GCAGC	2 cut(s)	155, 158
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	312, 366
Cac8I	GCNNGC	2 cut(s)	30, 226
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	2 cut(s)	154, 184
CviJI	RGCY	8 cut(s)	28, 119, 209, 224, 228, 284, 299, 327
CviKI_1	RGCY	8 cut(s)	28, 119, 209, 224, 228, 284, 299, 327
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	87, 393
DpnII	GATC	2 cut(s)	85, 391
Eam1104I	CTCTTC	2 cut(s)	128, 430
EarI	CTCTTC	2 cut(s)	128, 430
Eco57I	CTGAAG	2 cut(s)	146, 380
FaeI	CATG	2 cut(s)	157, 187
FaiI	YATR	6 cut(s)	72, 155, 185, 213, 308, 380
FatI	CATG	2 cut(s)	153, 183
Fnu4HI	GCNGC	3 cut(s)	144, 147, 216
Fsp4HI	GCNGC	3 cut(s)	144, 147, 216
FspBI	CTAG	2 cut(s)	225, 260
GluI	GCNGC	3 cut(s)	144, 147, 216
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	157, 187
HincII	GTYRAC	2 cut(s)	6, 271
HindII	GTYRAC	2 cut(s)	6, 271
HinfI	GANTC	1 cut(s)	136
HpaI	GTTAAC	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	6, 271
Hpy188I	TCNGA	2 cut(s)	160, 399
Hpy188III	TCNNGA	2 cut(s)	247, 260
Hpy8I	GTNNAC	2 cut(s)	6, 271
HpyAV	CCTTC	2 cut(s)	121, 425
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	6 cut(s)	32, 143, 179, 254, 344, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 221
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	157, 187
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	85, 391
LmnI	GCTCC	3 cut(s)	221, 296, 332
LpnPI	CCDG	5 cut(s)	137, 204, 250, 309, 431
Lsp1109I	GCAGC	2 cut(s)	155, 158
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	225, 260
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	87, 393
MboI	GATC	2 cut(s)	85, 391
MboII	GAAGA	4 cut(s)	145, 386, 440, 447
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	154, 361
MseI	TTAA	1 cut(s)	270
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	215, 221
NdeII	GATC	2 cut(s)	85, 391
NheI	GCTAGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	157, 187
NlaIV	GGNNCC	2 cut(s)	328, 452
PctI	GAATGC	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	145, 148, 217
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	328, 452
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	144, 147, 216
Sau3AI	GATC	2 cut(s)	85, 391
SchI	GAGTC	1 cut(s)	145
SetI	ASST	7 cut(s)	30, 55, 126, 226, 230, 286, 301
SfaNI	GCATC	1 cut(s)	331
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	91, 216
SspMI	CTAG	2 cut(s)	225, 260
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	81
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	319, 366
TseI	GCWGC	2 cut(s)	143, 146
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	319, 366
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	2 cut(s)	225, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.