Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Reverse (-)

52900078 .. 52901675

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0430500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGTGAAGGGGTTTCACGGTGAGTTTTCTTCCTTTTCCGGCTACCTTTGGTTTCAACTCGAGGGCTTGAAAAATTTGTTCAAGGAAAGAAAAATGACCAACCAAAATGTGCTTATTTCCGATGCCAAAGGCGTGGCTGTGGCTGTTGCTGCCATGAAGAATCAGTCTGTGTTCTCTTCATCGGTGGCGAATTCCATGATCGAATCAGGAGGAGGAGGCGGGTGTAATTTCACCATTCCCAGGAGTATTAAGCTTTTGAAGGTTGAGACTGCAGAGGTTGGTGGTGGTGGTGGAGCTGCCCGAGTCAATGCTTGTATGGCAGGATCTGATCCTGAGTCTTTGGATTTGCAGGTTCTGAGTGATCCACAGAAAAGAGCAATCTATGATCAGTATGGTGAAGAAGGCCTTAATGGCGGCATTCCGCCTCCAGATGCTGGGGGGCCTGGTGGTGCCACATATTTCCAAACTGGAGATGGTCCAAATGTGTTTAGATTCAACCCCAGGAATGCCAACGACATTTTTGCGGAGATCTTCGGGTTCTCTAGCCCGATGGGTGGTGGAATGGGAGGAGGTGGTTTTGGTAGTGGCATGAGGGGTGGAAGATCATCCTTTGGTGGAATGTTTGGGGATGACATGTTTAGTTCTTTTGGAGAAGGAAAAATGTCTGGGCTGTGTAGGGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

228

Amino Acids

23.63

Weight (kDa)

5.89

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	434
AciI	CCGC	4 cut(s)	219, 414, 422, 524
AclWI	GGATC	3 cut(s)	323, 331, 356
AcsI	RAATTY	2 cut(s)	73, 190
AfiI	CCNNNNNNNGG	3 cut(s)	240, 434, 554
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	5 cut(s)	56, 70, 82, 259, 496
AjnI	CCWGG	3 cut(s)	239, 442, 500
AluBI	AGCT	2 cut(s)	253, 296
AluI	AGCT	2 cut(s)	253, 296
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	323, 331, 356
AlwNI	CAGNNNCTG	3 cut(s)	326, 355, 434
Ama87I	CYCGRG	2 cut(s)	59, 300
AoxI	GGCC	2 cut(s)	403, 440
ApeKI	GCWGC	2 cut(s)	149, 296
ApoI	RAATTY	2 cut(s)	73, 190
AspS9I	GGNCC	2 cut(s)	440, 476
AsuHPI	GGTGA	4 cut(s)	16, 32, 223, 407
AvaI	CYCGRG	2 cut(s)	59, 300
AvaII	GGWCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	136, 283
BccI	CCATC	2 cut(s)	467, 544
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	3 cut(s)	241, 444, 502
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	3 cut(s)	150, 297, 415
BlsI	GCNGC	3 cut(s)	151, 298, 416
Bme1390I	CCNGG	3 cut(s)	241, 444, 502
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	2 cut(s)	59, 300
BmgT120I	GGNCC	2 cut(s)	440, 476
BmiI	GGNNCC	2 cut(s)	441, 451
BmrFI	CCNGG	3 cut(s)	241, 444, 502
BmsI	GCATC	2 cut(s)	112, 421
BpmI	CTGGAG	2 cut(s)	411, 489
BsaJI	CCNNGG	2 cut(s)	239, 500
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 434, 554
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	241, 444, 502
BseDI	CCNNGG	2 cut(s)	239, 500
BseGI	GGATG	2 cut(s)	605, 634
BseLI	CCNNNNNNNGG	3 cut(s)	240, 434, 554
BseMII	CTCAG	2 cut(s)	324, 347
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	3 cut(s)	225, 228, 582
BseXI	GCAGC	2 cut(s)	136, 283
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	2 cut(s)	405, 442
BshNI	GGYRCC	1 cut(s)	449
BsiHKCI	CYCGRG	2 cut(s)	59, 300
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	240, 434, 554
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	2 cut(s)	417, 511
BsnI	GGCC	2 cut(s)	405, 442
BsoBI	CYCGRG	2 cut(s)	59, 300
Bsp143I	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
BspACI	CCGC	4 cut(s)	219, 414, 422, 524
BspANI	GGCC	2 cut(s)	405, 442
BspCNI	CTCAG	2 cut(s)	325, 348
BspLI	GGNNCC	2 cut(s)	441, 451
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	3 cut(s)	323, 331, 356
BspT107I	GGYRCC	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	239, 500
BssMI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
Bst2UI	CCWGG	3 cut(s)	241, 444, 502
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	333, 356
BstF5I	GGATG	2 cut(s)	605, 634
BstKTI	GATC	7 cut(s)	201, 326, 331, 364, 388, 531, 605
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 317, 411
BstNI	CCWGG	3 cut(s)	241, 444, 502
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	3 cut(s)	239, 442, 500
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	136, 283
BstX2I	RGATCY	2 cut(s)	323, 528
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	323, 528
BsuRI	GGCC	2 cut(s)	405, 442
BtsCI	GGATG	2 cut(s)	605, 634
BveI	ACCTGC	1 cut(s)	340
CaiI	CAGNNNCTG	3 cut(s)	326, 355, 434
Cfr13I	GGNCC	2 cut(s)	440, 476
CviAII	CATG	4 cut(s)	154, 196, 589, 634
DdeI	CTNAG	2 cut(s)	333, 356
DpnI	GATC	7 cut(s)	200, 325, 330, 363, 387, 530, 604
DpnII	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	476
Eco88I	CYCGRG	2 cut(s)	59, 300
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	239, 442, 500
FaeI	CATG	4 cut(s)	157, 199, 592, 637
FaiI	YATR	8 cut(s)	155, 197, 317, 384, 393, 457, 590, 635
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	4 cut(s)	153, 195, 588, 633
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	150, 297, 415
FokI	GGATG	2 cut(s)	592, 641
Fsp4HI	GCNGC	3 cut(s)	150, 297, 415
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	3 cut(s)	150, 297, 415
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	411, 489
HaeIII	GGCC	2 cut(s)	405, 442
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	157, 199, 592, 637
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	5 cut(s)	160, 203, 303, 335, 492
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	4 cut(s)	16, 32, 223, 407
Hpy188I	TCNGA	3 cut(s)	121, 328, 357
Hpy188III	TCNNGA	3 cut(s)	207, 332, 428
HpyAV	CCTTC	3 cut(s)	253, 395, 647
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	272, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 317, 411
HpyF3I	CTNAG	2 cut(s)	333, 356
Hsp92II	CATG	4 cut(s)	157, 199, 592, 637
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	136, 283
LweI	GCATC	2 cut(s)	112, 421
MaeI	CTAG	1 cut(s)	543
MalI	GATC	7 cut(s)	200, 325, 330, 363, 387, 530, 604
MboI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
MboII	GAAGA	6 cut(s)	21, 168, 169, 410, 523, 612
MflI	RGATCY	2 cut(s)	323, 528
MluCI	AATT	3 cut(s)	73, 190, 226
MlyI	GAGTC	2 cut(s)	312, 344
MnlI	CCTC	9 cut(s)	55, 203, 206, 209, 268, 435, 560, 563, 585
MseI	TTAA	2 cut(s)	249, 408
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	3 cut(s)	241, 444, 502
Mva1269I	GAATGC	2 cut(s)	417, 511
MvaI	CCWGG	3 cut(s)	241, 444, 502
MwoI	GCNNNNNNNGC	3 cut(s)	149, 317, 411
NdeII	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
NlaIII	CATG	4 cut(s)	157, 199, 592, 637
NlaIV	GGNNCC	2 cut(s)	441, 451
NspI	RCATGY	1 cut(s)	637
PaeR7I	CTCGAG	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	405
PciI	ACATGT	1 cut(s)	633
PctI	GAATGC	2 cut(s)	417, 511
PfeI	GAWTC	3 cut(s)	160, 203, 492
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	151, 298, 416
PleI	GAGTC	2 cut(s)	311, 343
PpsI	GAGTC	2 cut(s)	311, 343
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	3 cut(s)	239, 442, 500
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	3 cut(s)	239, 442, 500
PspN4I	GGNNCC	2 cut(s)	441, 451
PspPI	GGNCC	2 cut(s)	440, 476
PspXI	VCTCGAGB	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	3 cut(s)	326, 355, 434
PsuI	RGATCY	2 cut(s)	323, 528
SaqAI	TTAA	2 cut(s)	249, 408
SatI	GCNGC	3 cut(s)	150, 297, 415
Sau3AI	GATC	7 cut(s)	198, 323, 328, 361, 385, 528, 602
Sau96I	GGNCC	2 cut(s)	440, 476
SchI	GAGTC	2 cut(s)	312, 344
ScrFI	CCNGG	3 cut(s)	241, 444, 502
SetI	ASST	7 cut(s)	48, 255, 264, 279, 298, 354, 574
SfaNI	GCATC	2 cut(s)	112, 421
SfcI	CTRYAG	1 cut(s)	270
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	73, 190, 226
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	4 cut(s)	219, 414, 422, 524
SspMI	CTAG	1 cut(s)	543
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	239, 442, 500
TaaI	ACNGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	60, 201
TasI	AATT	3 cut(s)	73, 190, 226
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	160, 203, 492
Tru1I	TTAA	2 cut(s)	249, 408
Tru9I	TTAA	2 cut(s)	249, 408
TseI	GCWGC	2 cut(s)	149, 296
TspDTI	ATGAA	2 cut(s)	168, 170
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	73, 190
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	59
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.