Prupe.2G191800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0005601
Physical Location & Seq
Forward (+)
23115003 .. 23118567
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G191800.1

Sequence Viewer

Length: 282 bp
ATGGAGAGCAACAACTGCATGTCCGTGCTGTCGTGTGTGGGCACCAACGTCGCCTCAGCCTTCTTCGCCTCACTGGAACGCTGCTCCTGCATCAACCTCAACACCACCGATTTCGACGACGACAATCACGCCATCAACGACGACGACGGCCGCCCTCTTTTCCTCACCTCCTCCAGGCCCACAGCGGCCCACCAAGCCCAGCCCATCATCGACCCCAATCAGCCCATCAACAAGCCCGCCGCCGCCGCCACCCACCACCTCAACAACGGCGTTTCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.88

Weight (kDa)

4.71

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 6 cut(s) 151, 185, 237, 240, 243, 246
AcoI YGGCCR 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 174
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AoxI GGCC 3 cut(s) 148, 176, 186
ApeKI GCWGC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 177, 187
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 140, 212, 233
BceAI ACGGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 175
BisI GCNGC 6 cut(s) 82, 151, 186, 240, 243, 246
BlsI GCNGC 6 cut(s) 83, 152, 187, 241, 244, 247
Bme1390I CCNGG 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 177, 187
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 150, 178, 188
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 174
BsnI GGCC 3 cut(s) 150, 178, 188
Bsp1286I GDGCHC 1 cut(s) 44
BspACI CCGC 6 cut(s) 151, 185, 237, 240, 243, 246
BspANI GGCC 3 cut(s) 150, 178, 188
BspCNI CTCAG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 175
BstAPI GCANNNNNTGC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 5 cut(s) 15, 65, 87, 194, 245
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 3 cut(s) 150, 178, 188
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 177, 187
CviAII CATG 1 cut(s) 19
CviJI RGCY 9 cut(s) 59, 150, 178, 188, 197, 202, 223, 235, 278
CviKI_1 RGCY 9 cut(s) 59, 150, 178, 188, 197, 202, 223, 235, 278
DdeI CTNAG 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 148
EagI CGGCCG 1 cut(s) 148
EclXI CGGCCG 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 173
FaeI CATG 1 cut(s) 22
FaiI YATR 1 cut(s) 20
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 6 cut(s) 82, 151, 186, 240, 243, 246
Fsp4HI GCNGC 6 cut(s) 82, 151, 186, 240, 243, 246
GluI GCNGC 6 cut(s) 82, 151, 186, 240, 243, 246
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 3 cut(s) 150, 178, 188
Hin1II CATG 1 cut(s) 22
HphI GGTGA 1 cut(s) 157
Hpy99I CGWCG 6 cut(s) 53, 119, 122, 143, 146, 149
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 18, 90
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 65, 87, 194, 245
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 59, 100, 160, 187, 212
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 48
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 44
MnlI CCTC 8 cut(s) 64, 79, 107, 165, 173, 178, 181, 269
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 5 cut(s) 15, 65, 87, 194, 245
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 43
NspI RCATGY 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PkrI GCNGC 6 cut(s) 83, 152, 187, 241, 244, 247
Psp6I CCWGG 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 177, 187
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 6 cut(s) 82, 151, 186, 240, 243, 246
Sau96I GGNCC 2 cut(s) 177, 187
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 44
SetI ASST 5 cut(s) 51, 99, 170, 261, 280
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 23
SsiI CCGC 6 cut(s) 151, 185, 237, 240, 243, 246
StyD4I CCNGG 1 cut(s) 173
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 114, 210
TauI GCSGC 5 cut(s) 153, 188, 242, 245, 248
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 172
XceI RCATGY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.