Rh5BG201700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005601
Physical Location & Seq
Reverse (-)
22798465 .. 22798707
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG201700.1

Sequence Viewer

Length: 243 bp
ATGTCGGTGCTATCGTGCGTCAGCACCAACACCGACTCCGATTTCTTCGCCTCACTGGAAAGGTGCTCCTGGATCAATCTTAGCACCACCGATTTCGAAGACGATGACAACAACATCATTTGCGCCGACGACGACCACGACTCTCTCTTGCTCTCCTCCGGGCCCACCTCGGAGGCCACCCAGCCTAAGCCCAATCTCAATCTCAATCAGCCCGCCCTTGCGGCCCACGTGGTCGCCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.59

Weight (kDa)

4.05

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 213, 221
AclWI GGATC 1 cut(s) 80
AcvI CACGTG 1 cut(s) 229
AjnI CCWGG 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 80
AoxI GGCC 3 cut(s) 161, 174, 222
ApaI GGGCCC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 161, 162, 223
AsuC2I CCSGG 1 cut(s) 160
AsuII TTCGAA 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 165
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 70
BcnI CCSGG 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 70, 160
BmgT120I GGNCC 3 cut(s) 161, 162, 223
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 70, 160
BpiI GAAGAC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 165
BseYI CCCAGC 1 cut(s) 180
BshFI GGCC 3 cut(s) 163, 176, 224
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 159
BsnI GGCC 3 cut(s) 163, 176, 224
Bsp119I TTCGAA 1 cut(s) 96
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 68, 165
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 2 cut(s) 213, 221
BspANI GGCC 3 cut(s) 163, 176, 224
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 80, 186
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 68, 158
BstSLI GKGCMC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 3 cut(s) 163, 176, 224
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 161, 162, 223
CseI GACGC 1 cut(s) 7
CviJI RGCY 6 cut(s) 163, 176, 184, 190, 211, 224
CviKI_1 RGCY 6 cut(s) 163, 176, 184, 190, 211, 224
DdeI CTNAG 2 cut(s) 80, 186
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 165
Eco72I CACGTG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 165
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 222
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 3 cut(s) 163, 176, 224
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 7
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 35, 140
HpaII CCGG 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 40, 172
Hpy188III TCNNGA 1 cut(s) 240
Hpy99I CGWCG 2 cut(s) 131, 134
HpyCH4IV ACGT 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 80, 186
HpySE526I ACGT 1 cut(s) 228
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 5 cut(s) 41, 55, 82, 172, 194
MaeII ACGT 1 cut(s) 228
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 2 cut(s) 37, 110
MhlI GDGCHC 2 cut(s) 68, 165
MlyI GAGTC 2 cut(s) 29, 134
MnlI CCTC 4 cut(s) 61, 166, 166, 178
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 70, 160
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 160
NdeII GATC 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 96
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 135
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 29, 134
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 2 cut(s) 29, 134
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 68
PspCI CACGTG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 163
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 3 cut(s) 161, 162, 223
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 3 cut(s) 161, 162, 223
SchI GAGTC 2 cut(s) 29, 134
ScrFI CCNGG 2 cut(s) 70, 160
SduI GDGCHC 2 cut(s) 68, 165
SetI ASST 3 cut(s) 65, 170, 231
SfuI TTCGAA 1 cut(s) 96
SsiI CCGC 2 cut(s) 213, 221
StyD4I CCNGG 2 cut(s) 68, 158
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 96
TauI GCSGC 1 cut(s) 224
TscAI CASTG 1 cut(s) 60
TspRI CASTG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.