RLG00000026212

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005601
Physical Location & Seq
Reverse (-)
1257842 .. 1258936
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026212

Sequence Viewer

Length: 465 bp
ATGGAGAGCCAGCAGAGCTCGTGCCTGAGCTGGCTGGGGATGCACGTGGCCTCGGCCTTCTTCGCTTCTCTGGAACGTTGCTCGTGCATCAACCTATCTACTCACGACGACAACGACTTCACCACCAACCCTGAGGAGGCACACGACCGCCCTCTCATGCTCTTCTCTCGCTCCGTCAATCTCAGCGATCACCGCCCCCAATCGTTCCCCTCCACGTCGACAACATTGCATTTCATCGTCTTCTGTTTAGATTCGGAAGTAAGGATAGGTGAATGGAGCAAGGTATCAAGCGATGAAGCTTGTCTTGGAATAGATATGGTAACTGAGCGTGGAAATGGAGGAGCAGCCTCCACACTCCACAGGTGGAAAGCTAATTGGGCTAAATTGGGACAGGTTACTTGGCGGTGGGCTAAATTGCTGTGGGGGTTTGTCACTTTCCCTTCTATACTTAGCATTGGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.25

Weight (kDa)

5.81

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 218
AciI CCGC 3 cut(s) 148, 193, 403
AclI AACGTT 1 cut(s) 76
AcvI CACGTG 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 136
AjiI CACGTC 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 18, 30, 299, 371
AluI AGCT 4 cut(s) 18, 30, 299, 371
Alw21I GWGCWC 1 cut(s) 20
AoxI GGCC 2 cut(s) 48, 54
ApeKI GCWGC 1 cut(s) 344
AsuHPI GGTGA 3 cut(s) 112, 182, 281
AxyI CCTNAGG 1 cut(s) 132
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 2 cut(s) 19, 82
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 356
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BfmI CTRYAG 1 cut(s) 461
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 216
BmsI GCATC 2 cut(s) 30, 96
BpiI GAAGAC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 4 cut(s) 17, 123, 196, 315
BseRI GAGGAG 2 cut(s) 149, 354
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 50, 56
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 2 cut(s) 50, 56
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 148, 193, 403
BspANI GGCC 2 cut(s) 50, 56
BspCNI CTCAG 4 cut(s) 18, 124, 195, 316
BspQI GCTCTTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 187
BssSI CACGAG 2 cut(s) 19, 82
Bst2BI CACGAG 2 cut(s) 19, 82
Bst6I CTCTTC 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 11, 32
BstDEI CTNAG 5 cut(s) 26, 132, 182, 324, 449
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 15, 40, 62, 192, 377
BstSFI CTRYAG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 50, 56
BtgZI GCGATG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 11, 32
CviAII CATG 1 cut(s) 157
DdeI CTNAG 5 cut(s) 26, 132, 182, 324, 449
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco72I CACGTG 1 cut(s) 46
Eco81I CCTNAGG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 158, 317, 446, 463
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 402
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 50, 56
Hin1II CATG 1 cut(s) 160
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 251
HphI GGTGA 3 cut(s) 112, 182, 281
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 71, 104
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 2 cut(s) 110, 220
HpyAV CCTTC 2 cut(s) 67, 450
HpyCH4IV ACGT 3 cut(s) 45, 76, 215
HpyCH4V TGCA 3 cut(s) 43, 87, 229
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 40, 62, 192, 377
HpyF3I CTNAG 5 cut(s) 26, 132, 182, 324, 449
HpySE526I ACGT 3 cut(s) 45, 76, 215
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 187
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 3 cut(s) 176, 276, 341
LpnPI CCDG 8 cut(s) 16, 20, 23, 38, 56, 144, 346, 377
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 2 cut(s) 30, 96
MaeII ACGT 3 cut(s) 45, 76, 215
MaeIII GTNAC 3 cut(s) 319, 394, 430
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 52, 154, 232
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 373, 383, 413
MnlI CCTC 7 cut(s) 61, 127, 130, 162, 220, 332, 358
MwoI GCNNNNNNNGC 5 cut(s) 15, 40, 62, 192, 377
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 346
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 76
PspCI CACGTG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 167
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 2 cut(s) 30, 96
SfcI CTRYAG 1 cut(s) 461
Sse9I AATT 3 cut(s) 373, 383, 413
SsiI CCGC 3 cut(s) 148, 193, 403
SstI GAGCTC 1 cut(s) 20
TaiI ACGT 3 cut(s) 48, 79, 218
TaqI TCGA 1 cut(s) 218
TasI AATT 3 cut(s) 373, 383, 413
TfiI GAWTC 1 cut(s) 251
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 223, 309
TspGWI ACGGA 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.