Rorug07G0079800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
6219161 .. 6221894
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0079800.1

Sequence Viewer

Length: 1395 bp
ATGGATGCAATGGGAAAAACCAGATCGGTTCTAACATTGACAGGAAGATTCATAAACGAGGCTGTGAGCTTCTTTGTCTTCTCCATTCTCGACCTTGTCGATTTCCTCCTGTGCTTTCTCTACAAAGTTGCGGACCTTTTCTTTGAAGCCGAATGGAAGCCTTGCTACTGCTCATCTTCCAAAGAGGCCATTACGAACAGCGGCAAGATCTTGCTCTCAGAGCAAGGCGAGTCGAAAATCGTCTGCCTTAGCTCGACGAAGCTACAGCTCGAGGAGATCTCAGACACACTCTACACGCGCCCTTCGCTCTTATCCGAGGTCTCCAAGATGACTACGAGGGAGAACAAGAGAGGTTCGGCCGTTCGATCCACGTTCACGGTCAACTCCACCATCGTCGAAATGCTTCAGGGAAAGATTGGAGGCCAAATATGTCACCCTATCCCGAGGTGGTCGGATTGTGACTGTAAATTCTGCACTTCTTGGACCTCTTCTTGCAAAGAAACCCTCTATGTTAAAGCTGAAGGACCCAAAGATCATGATGCACGAGAAGATGTGCTATTCATTCATGGGTTTATTTCATCATCGGCATTCTGGACGGAGACGGTGTTCCCAAACCTTTCAAGCGCTGCAAAATCAAATTTTAGGCTTTTTGCTATTGATCTTTTGGGGTTTGGAAGGAGTCCAAAGCCAGCCGACTCCATGTACACCCTCAGAGAACACTTGGAAATGATTGAACAGTCCGTGCTTGAACCTCATAAAGTTAAATCCTTCCACATTGTGGCTCATTCGTTAGGCTGCATTTTGGCCCTTGCCCTTGCCGTTAAACACCCCAACTCCATCAAATCCCTCACTTTACTCGCCCCGCCATACTTCCCTATACCAAAAGGGGCACAAGCAACACAACATACGATGAGGATGGTGGCTCCGAGACGTGTTTGGCCGGTGATTGCATTTGGTGCGTCAATTGCGTGTTGGTACGAGCACATCTCACGGACGGTGTGCCTTCTCATTTGCAAGAACCACCGTTTTGTGGAGTTTGTTGCCAAACTTGTGACTAGAAACAGGATGAGAACTTTTTTGCTTGAAGGGTTCTTCTGCCACACACACAACGCAGCATGGCACACACTACACAACGTTATATGCGGCACCGCAGGCAAGATGGACGCCTACTTAGACACTGTTCGAGACAATCTAAAATGCGACGTTAATGTGTTCCATGGCAGAGATGATGAACTGATCCCAGTTGAATGCAGCTACAATGTGCAATCGAGAGTTCCTCGTGCTCGCGTTAAGGTGATTGAGAAGAAAGATCACATCACGATTGTCGTTGGGAGACAGAAGGCTTTCGCTAGAGAGCTAGAGGCGATTTGGAACAATTCATCTCCAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

52.26

Weight (kDa)

8.74

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 181 - 436 6.7e-12 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 185 - 305 2.1e-25 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 185 - 450 1.8e-17 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1145
AccB7I CCANNNNNTGG 1 cut(s) 778
AccII CGCG 2 cut(s) 298, 1287
AciI CCGC 5 cut(s) 131, 201, 863, 1143, 1149
AclI AACGTT 1 cut(s) 1134
AclWI GGATC 2 cut(s) 360, 1231
AcoI YGGCCR 2 cut(s) 357, 938
AcsI RAATTY 2 cut(s) 467, 637
AcuI CTGAAG 2 cut(s) 389, 540
AcyI GRCGYC 1 cut(s) 1164
AdeI CACNNNGTG 1 cut(s) 778
AfaI GTAC 2 cut(s) 704, 977
AfeI AGCGCT 1 cut(s) 625
AfiI CCNNNNNNNGG 2 cut(s) 778, 1030
AflIII ACRYGT 1 cut(s) 931
AgsI TTSAA 6 cut(s) 146, 621, 734, 749, 1085, 1247
AjiI CACGTC 1 cut(s) 932
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 7 cut(s) 69, 252, 262, 268, 518, 1254, 1357
AluI AGCT 7 cut(s) 69, 252, 262, 268, 518, 1254, 1357
Alw21I GWGCWC 2 cut(s) 984, 1285
Alw26I GTCTC 5 cut(s) 325, 593, 922, 1179, 1327
AlwI GGATC 2 cut(s) 360, 1231
Ama87I CYCGRG 2 cut(s) 269, 442
Aor51HI AGCGCT 1 cut(s) 625
AoxI GGCC 5 cut(s) 186, 357, 421, 804, 938
ApeKI GCWGC 4 cut(s) 626, 795, 1112, 1251
ApoI RAATTY 2 cut(s) 467, 637
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 2 cut(s) 402, 1343
AspLEI GCGC 2 cut(s) 300, 626
AspS9I GGNCC 4 cut(s) 133, 483, 524, 805
AsuHPI GGTGA 3 cut(s) 425, 955, 1306
AvaI CYCGRG 2 cut(s) 269, 442
AvaII GGWCC 3 cut(s) 133, 483, 524
BaeGI GKGCMC 1 cut(s) 892
BanI GGYRCC 1 cut(s) 1145
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BauI CACGAG 2 cut(s) 543, 1278
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 984, 1285
BbvI GCAGC 4 cut(s) 613, 782, 1124, 1263
BccI CCATC 4 cut(s) 398, 845, 910, 1153
BceAI ACGGC 2 cut(s) 344, 803
BcoDI GTCTC 5 cut(s) 325, 593, 922, 1179, 1327
BfaI CTAG 3 cut(s) 1056, 1350, 1358
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 627
BglII AGATCT 2 cut(s) 207, 276
BisI GCNGC 6 cut(s) 202, 627, 796, 1113, 1144, 1252
BlsI GCNGC 6 cut(s) 203, 628, 797, 1114, 1145, 1253
Bme18I GGWCC 3 cut(s) 133, 483, 524
BmeT110I CYCGRG 2 cut(s) 269, 442
BmgBI CACGTC 1 cut(s) 932
BmgT120I GGNCC 4 cut(s) 133, 483, 524, 805
BmiI GGNNCC 3 cut(s) 526, 924, 1147
BmrI ACTGGG 1 cut(s) 1235
BmsI GCATC 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 1235
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 6 cut(s) 263, 295, 971, 1003, 1261, 1293
Bpu10I CCTNAGC 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 1164
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 315, 443, 1216
BsaXI ACNNNNNCTCC 4 cut(s) 590, 620, 818, 848
Bsc4I CCNNNNNNNGG 2 cut(s) 778, 1030
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 1 cut(s) 1241
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 315, 443, 1216
BseGI GGATG 3 cut(s) 10, 921, 1071
BseLI CCNNNNNNNGG 2 cut(s) 778, 1030
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 231, 294, 724
BseNI ACTGG 1 cut(s) 1241
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 892
BseX3I CGGCCG 1 cut(s) 357
BseXI GCAGC 4 cut(s) 613, 782, 1124, 1263
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 2 cut(s) 298, 1287
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 5 cut(s) 188, 359, 423, 806, 940
BshNI GGYRCC 1 cut(s) 1145
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 984, 1285
BsiHKCI CYCGRG 2 cut(s) 269, 442
BsiSI CCGG 1 cut(s) 941
BslI CCNNNNNNNGG 2 cut(s) 778, 1030
BsmAI GTCTC 5 cut(s) 325, 593, 922, 1179, 1327
BsmBI CGTCTC 2 cut(s) 593, 922
BsmI GAATGC 2 cut(s) 587, 1253
BsnI GGCC 5 cut(s) 188, 359, 423, 806, 940
Bso31I GGTCTC 1 cut(s) 325
BsoBI CYCGRG 2 cut(s) 269, 442
Bsp1286I GDGCHC 3 cut(s) 892, 984, 1285
Bsp1407I TGTACA 1 cut(s) 702
Bsp143I GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
Bsp19I CCATGG 1 cut(s) 1216
BspACI CCGC 5 cut(s) 131, 201, 863, 1143, 1149
BspANI GGCC 5 cut(s) 188, 359, 423, 806, 940
BspCNI CTCAG 3 cut(s) 230, 293, 723
BspFNI CGCG 2 cut(s) 298, 1287
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 526, 924, 1147
BspPI GGATC 2 cut(s) 360, 1231
BspT107I GGYRCC 1 cut(s) 1145
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 940
BsrGI TGTACA 1 cut(s) 702
BsrI ACTGG 1 cut(s) 1241
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 3 cut(s) 315, 443, 1216
BssMI GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
BssNI GRCGYC 1 cut(s) 1164
BssSI CACGAG 2 cut(s) 543, 1278
BssT1I CCWWGG 1 cut(s) 1216
Bst2BI CACGAG 2 cut(s) 543, 1278
Bst4CI ACNGT 7 cut(s) 379, 464, 604, 738, 997, 1025, 1180
Bst6I CTCTTC 1 cut(s) 493
BstACI GRCGYC 1 cut(s) 1164
BstAPI GCANNNNNTGC 1 cut(s) 956
BstAUI TGTACA 1 cut(s) 702
BstC8I GCNNGC 3 cut(s) 690, 1153, 1285
BstDEI CTNAG 5 cut(s) 217, 248, 280, 710, 1171
BstDSI CCRYGG 1 cut(s) 1216
BstF5I GGATG 3 cut(s) 10, 921, 1071
BstFNI CGCG 2 cut(s) 298, 1287
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 2 cut(s) 300, 626
BstKTI GATC 8 cut(s) 26, 210, 279, 368, 535, 661, 1239, 1312
BstMAI GTCTC 5 cut(s) 325, 593, 922, 1179, 1327
BstMBI GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 5 cut(s) 220, 304, 956, 965, 1152
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 2 cut(s) 298, 1287
BstV1I GCAGC 4 cut(s) 613, 782, 1124, 1263
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 2 cut(s) 207, 276
BstYI RGATCY 2 cut(s) 207, 276
BstZI CGGCCG 1 cut(s) 357
BsuRI GGCC 5 cut(s) 188, 359, 423, 806, 940
BtgI CCRYGG 1 cut(s) 1216
BtrI CACGTC 1 cut(s) 932
BtsCI GGATG 3 cut(s) 10, 921, 1071
BtsIMutI CAGTG 1 cut(s) 1176
Cac8I GCNNGC 3 cut(s) 690, 1153, 1285
CciI TCATGA 1 cut(s) 535
CfoI GCGC 2 cut(s) 300, 626
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 4 cut(s) 133, 483, 524, 805
CseI GACGC 2 cut(s) 948, 1172
Csp6I GTAC 2 cut(s) 703, 976
CviAII CATG 5 cut(s) 536, 566, 700, 1116, 1217
CviQI GTAC 2 cut(s) 703, 976
DdeI CTNAG 5 cut(s) 217, 248, 280, 710, 1171
DpnI GATC 8 cut(s) 25, 209, 278, 367, 534, 660, 1238, 1311
DpnII GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
DraIII CACNNNGTG 1 cut(s) 778
EaeI YGGCCR 2 cut(s) 357, 938
EagI CGGCCG 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
EclXI CGGCCG 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 1216
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 3 cut(s) 133, 483, 524
Eco47III AGCGCT 1 cut(s) 625
Eco52I CGGCCG 1 cut(s) 357
Eco57I CTGAAG 2 cut(s) 389, 540
Eco88I CYCGRG 2 cut(s) 269, 442
EcoO109I RGGNCCY 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 1216
Esp3I CGTCTC 2 cut(s) 593, 922
FaeI CATG 5 cut(s) 539, 569, 703, 1119, 1220
FatI CATG 5 cut(s) 535, 565, 699, 1115, 1216
FauI CCCGC 1 cut(s) 870
Fnu4HI GCNGC 6 cut(s) 202, 627, 796, 1113, 1144, 1252
FokI GGATG 3 cut(s) 17, 928, 1078
Fsp4HI GCNGC 6 cut(s) 202, 627, 796, 1113, 1144, 1252
FspBI CTAG 3 cut(s) 1056, 1350, 1358
GlaI GCGC 2 cut(s) 299, 625
GluI GCNGC 6 cut(s) 202, 627, 796, 1113, 1144, 1252
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 5 cut(s) 188, 359, 423, 806, 940
HapII CCGG 1 cut(s) 941
HgaI GACGC 2 cut(s) 948, 1172
HhaI GCGC 2 cut(s) 300, 626
Hin1I GRCGYC 1 cut(s) 1164
Hin1II CATG 5 cut(s) 539, 569, 703, 1119, 1220
Hin6I GCGC 2 cut(s) 298, 624
HinP1I GCGC 2 cut(s) 298, 624
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 4 cut(s) 48, 230, 679, 695
HpaII CCGG 1 cut(s) 941
HphI GGTGA 3 cut(s) 425, 955, 1306
Hpy166II GTNNAC 3 cut(s) 375, 382, 705
Hpy188I TCNGA 6 cut(s) 220, 283, 316, 454, 713, 927
Hpy188III TCNNGA 7 cut(s) 89, 442, 536, 592, 1184, 1269, 1318
Hpy8I GTNNAC 3 cut(s) 375, 382, 705
Hpy99I CGWCG 3 cut(s) 259, 398, 1205
HpyAV CCTTC 7 cut(s) 312, 515, 669, 778, 1013, 1079, 1333
HpyCH4III ACNGT 7 cut(s) 379, 464, 604, 738, 997, 1025, 1180
HpyCH4IV ACGT 4 cut(s) 371, 931, 1134, 1203
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 304, 956, 965, 1152
HpyF3I CTNAG 5 cut(s) 217, 248, 280, 710, 1171
HpySE526I ACGT 4 cut(s) 371, 931, 1134, 1203
Hsp92I GRCGYC 1 cut(s) 1164
Hsp92II CATG 5 cut(s) 539, 569, 703, 1119, 1220
HspAI GCGC 2 cut(s) 298, 624
Kzo9I GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
LmnI GCTCC 1 cut(s) 928
Lsp1109I GCAGC 4 cut(s) 613, 782, 1124, 1263
LweI GCATC 1 cut(s) 529
MaeI CTAG 3 cut(s) 1056, 1350, 1358
MaeII ACGT 4 cut(s) 371, 931, 1134, 1203
MaeIII GTNAC 3 cut(s) 431, 458, 1051
MalI GATC 8 cut(s) 25, 209, 278, 367, 534, 660, 1238, 1311
MboI GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
MboII GAAGA 7 cut(s) 57, 70, 168, 480, 560, 1084, 1315
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 2 cut(s) 207, 276
MhlI GDGCHC 3 cut(s) 892, 984, 1285
MluCI AATT 4 cut(s) 467, 637, 963, 1375
MlyI GAGTC 3 cut(s) 239, 688, 689
MmeI TCCRAC 1 cut(s) 432
MroXI GAANNNNTTC 2 cut(s) 402, 1343
MseI TTAA 6 cut(s) 513, 762, 822, 1206, 1290, 1393
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 1 cut(s) 941
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 2 cut(s) 587, 1253
MvnI CGCG 2 cut(s) 298, 1287
MwoI GCNNNNNNNGC 5 cut(s) 220, 304, 956, 965, 1152
NcoI CCATGG 1 cut(s) 1216
NdeII GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
NlaIII CATG 5 cut(s) 539, 569, 703, 1119, 1220
NlaIV GGNNCC 3 cut(s) 526, 924, 1147
NmuCI GTSAC 3 cut(s) 431, 458, 1051
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 2 cut(s) 587, 1253
PdmI GAANNNNTTC 2 cut(s) 402, 1343
PfeI GAWTC 1 cut(s) 48
PflFI GACNNNGTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 6 cut(s) 203, 628, 797, 1114, 1145, 1253
PleI GAGTC 3 cut(s) 238, 687, 689
PpsI GAGTC 3 cut(s) 238, 687, 689
PpuMI RGGWCCY 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 1134
Psp5II RGGWCCY 1 cut(s) 524
PspN4I GGNNCC 3 cut(s) 526, 924, 1147
PspPI GGNCC 4 cut(s) 133, 483, 524, 805
PspPPI RGGWCCY 1 cut(s) 524
PspXI VCTCGAGB 1 cut(s) 269
PsuI RGATCY 2 cut(s) 207, 276
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 2 cut(s) 704, 977
RsaNI GTAC 2 cut(s) 703, 976
SaqAI TTAA 6 cut(s) 513, 762, 822, 1206, 1290, 1393
SatI GCNGC 6 cut(s) 202, 627, 796, 1113, 1144, 1252
Sau3AI GATC 8 cut(s) 23, 207, 276, 365, 532, 658, 1236, 1309
Sau96I GGNCC 4 cut(s) 133, 483, 524, 805
SchI GAGTC 3 cut(s) 239, 688, 689
SduI GDGCHC 3 cut(s) 892, 984, 1285
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 3 cut(s) 133, 483, 524
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 467, 637, 963, 1375
SsiI CCGC 5 cut(s) 131, 201, 863, 1143, 1149
SspMI CTAG 3 cut(s) 1056, 1350, 1358
StyI CCWWGG 1 cut(s) 1216
TaaI ACNGT 7 cut(s) 379, 464, 604, 738, 997, 1025, 1180
TaiI ACGT 4 cut(s) 374, 934, 1137, 1206
TaqI TCGA 9 cut(s) 90, 99, 233, 254, 270, 364, 396, 1183, 1268
TasI AATT 4 cut(s) 467, 637, 963, 1375
TatI WGTACW 1 cut(s) 702
TauI GCSGC 2 cut(s) 204, 1146
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 6 cut(s) 513, 762, 822, 1206, 1290, 1393
Tru9I TTAA 6 cut(s) 513, 762, 822, 1206, 1290, 1393
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 3 cut(s) 431, 458, 1051
TseI GCWGC 4 cut(s) 626, 795, 1112, 1251
Tsp45I GTSAC 3 cut(s) 431, 458, 1051
TspDTI ATGAA 6 cut(s) 40, 550, 554, 567, 1245, 1368
TspGWI ACGGA 3 cut(s) 611, 730, 1006
TspRI CASTG 1 cut(s) 1183
Tth111I GACNNNGTC 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 3 cut(s) 133, 483, 524
XapI RAATTY 2 cut(s) 467, 637
XhoI CTCGAG 1 cut(s) 269
XmnI GAANNNNTTC 2 cut(s) 402, 1343
XspI CTAG 3 cut(s) 1056, 1350, 1358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.