Rh5DG143000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005601
Physical Location & Seq
Forward (+)
14673369 .. 14674199
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG143000.1

Sequence Viewer

Length: 261 bp
ATGGAGACCAGCAACTGCATGTCGGTGCTGTCGTGCGTCAGCACTAGCGCCGCCTCCGCCTTCTTCGCTGCACTGGAAAGGTGCTCCTCGATCAATCTCAGCACCACCGATTTCGAAGACGACGACAACAACATCATCTGCGCCGACGACAACCACGACTCCCTCTTGCTCTCCTCTCGGCCCACCTTGGAGGCCGCCCAGCCCAAGCCCAATCTCAATCTCAATCAGCCCTCCCCCGCCGCCCACGTGGTCGCCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.07

Weight (kDa)

4.14

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 51, 57, 195, 237, 240, 255
AcvI CACGTG 1 cut(s) 247
Alw21I GWGCWC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 2 cut(s) 179, 192
ApeKI GCWGC 1 cut(s) 68
AspLEI GCGC 2 cut(s) 50, 143
AspS9I GGNCC 1 cut(s) 180
AsuII TTCGAA 1 cut(s) 114
BbrPI CACGTG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 55
BfaI CTAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 5 cut(s) 51, 69, 195, 240, 255
BlsI GCNGC 5 cut(s) 52, 70, 196, 241, 256
BmgT120I GGNCC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bse1I ACTGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 76, 163
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 2 cut(s) 181, 194
BsiHKAI GWGCWC 1 cut(s) 86
BsnI GGCC 2 cut(s) 181, 194
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 6 cut(s) 51, 57, 195, 237, 240, 255
BspANI GGCC 2 cut(s) 181, 194
BspCNI CTCAG 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 143
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 56, 65
BstNSI RCATGY 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 181, 194
BtsIMutI CAGTG 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 15
CfoI GCGC 2 cut(s) 50, 143
Cfr13I GGNCC 1 cut(s) 180
CseI GACGC 1 cut(s) 25
CviAII CATG 1 cut(s) 19
CviJI RGCY 5 cut(s) 181, 194, 202, 208, 229
CviKI_1 RGCY 5 cut(s) 181, 194, 202, 208, 229
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 186
Eco72I CACGTG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 22
FaiI YATR 1 cut(s) 20
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 51, 69, 195, 240, 255
Fsp4HI GCNGC 5 cut(s) 51, 69, 195, 240, 255
FspBI CTAG 1 cut(s) 45
GlaI GCGC 2 cut(s) 49, 142
GluI GCNGC 5 cut(s) 51, 69, 195, 240, 255
GsaI CCCAGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 2 cut(s) 181, 194
HgaI GACGC 1 cut(s) 25
HhaI GCGC 2 cut(s) 50, 143
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 2 cut(s) 48, 141
HinP1I GCGC 2 cut(s) 48, 141
HinfI GANTC 1 cut(s) 158
Hpy99I CGWCG 2 cut(s) 125, 149
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 18, 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 65
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 2 cut(s) 48, 141
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 3 cut(s) 22, 59, 212
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 55, 128
MhlI GDGCHC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 6 cut(s) 64, 97, 173, 184, 184, 241
MslI CAYNNNNRTG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 56, 65
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 157
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 120, 153
PkrI GCNGC 5 cut(s) 52, 70, 196, 241, 256
PleI GAGTC 1 cut(s) 152
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 247
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 5 cut(s) 51, 69, 195, 240, 255
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 86
SetI ASST 3 cut(s) 83, 188, 249
SfuI TTCGAA 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 23
SsiI CCGC 6 cut(s) 51, 57, 195, 237, 240, 255
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 89, 114
TauI GCSGC 4 cut(s) 53, 197, 242, 257
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 68
TspRI CASTG 1 cut(s) 78
XceI RCATGY 1 cut(s) 22
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.