Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Forward (+)

53298693 .. 53298962

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAGAGCCAGCAGAGCTCTTGCCTGAGCTGGCTGGGGATGCACGTGGCCTCGGCCTTCTTCGCTTCTCTGGAACGTTGCTCGTGCATCAACCTATCTACTCACGACGACAACGACTTCACCACCAACCCCGAGGAGGCACACGACCGACCTCTCATGCTCTTCTCTCGCTCCGTCAATCTCAGCGATCACCGCCCCCAGTCGTTCCCCTCCACGTCGACGACGCCCGGCCATCCTAACCTAAACGACGTCGCCAAGCTCCCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

5.28

Isoelectric Point (pI)

67.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	1 cut(s)	193
AclI	AACGTT	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	229
AcvI	CACGTG	1 cut(s)	46
AcyI	GRCGYC	2 cut(s)	224, 249
AfiI	CCNNNNNNNGG	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	216
AluBI	AGCT	3 cut(s)	18, 30, 259
AluI	AGCT	3 cut(s)	18, 30, 259
Alw21I	GWGCWC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	3 cut(s)	48, 54, 229
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	112, 182
AvaI	CYCGRG	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	82
BbrPI	CACGTG	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	20
BccI	CCATC	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	2 cut(s)	193, 257
BmsI	GCATC	2 cut(s)	30, 96
BmuI	ACTGGG	2 cut(s)	193, 257
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	46
BsaHI	GRCGYC	2 cut(s)	224, 249
BsaJI	CCNNGG	2 cut(s)	51, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	199, 263
BseDI	CCNNGG	2 cut(s)	51, 132
BseGI	GGATG	2 cut(s)	45, 232
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	17, 196
BseNI	ACTGG	2 cut(s)	199, 263
BseRI	GAGGAG	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	50, 56, 231
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	3 cut(s)	50, 56, 231
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	3 cut(s)	50, 56, 231
BspCNI	CTCAG	2 cut(s)	18, 195
BspQI	GCTCTTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	199, 263
BssECI	CCNNGG	2 cut(s)	51, 132
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	2 cut(s)	224, 249
BssSI	CACGAG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	2 cut(s)	224, 249
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	11, 32
BstDEI	CTNAG	2 cut(s)	26, 182
BstF5I	GGATG	2 cut(s)	45, 232
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 40, 62, 192
BstSCI	CCNGG	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	50, 56, 231
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	45, 232
Cac8I	GCNNGC	2 cut(s)	11, 32
CseI	GACGC	1 cut(s)	232
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	8 cut(s)	9, 18, 30, 34, 50, 56, 231, 259
CviKI_1	RGCY	8 cut(s)	9, 18, 30, 34, 50, 56, 231, 259
DdeI	CTNAG	2 cut(s)	26, 182
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FatI	CATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	218
FokI	GGATG	2 cut(s)	52, 219
FriOI	GRGCYC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	50, 56, 231
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	232
Hin1I	GRCGYC	2 cut(s)	224, 249
Hin1II	CATG	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	112, 182
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	71, 104
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	6 cut(s)	110, 220, 223, 226, 251, 254
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	4 cut(s)	45, 76, 215, 249
HpyCH4V	TGCA	2 cut(s)	43, 87
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 40, 62, 192
HpyF3I	CTNAG	2 cut(s)	26, 182
HpySE526I	ACGT	4 cut(s)	45, 76, 215, 249
Hsp92I	GRCGYC	2 cut(s)	224, 249
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	176, 264
LpnPI	CCDG	7 cut(s)	16, 20, 23, 38, 56, 212, 241
LweI	GCATC	2 cut(s)	30, 96
MaeII	ACGT	4 cut(s)	45, 76, 215, 249
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	52, 154
MhlI	GDGCHC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	61, 127, 130, 162, 220
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	15, 40, 62, 192
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	76
PspCI	CACGTG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	2 cut(s)	30, 96
SgrDI	CGTCGACG	1 cut(s)	217
SsiI	CCGC	1 cut(s)	193
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	226
TaiI	ACGT	4 cut(s)	48, 79, 218, 252
TaqI	TCGA	1 cut(s)	218
TaqII	GACCGA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	218
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.