Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Forward (+)

19042535 .. 19042822

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1084100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGACCAACTGCATGTCCTTGCTGTCGTGTGTGGGCACCAACGTCGCCTCCGCCTTCTTCGCCTCACTGGAACGCTGCTCCTGCATCAATCTCAACACCGCCGATTTCGACGACGACAATCACAACATCACCAACGACGACCGTCCTCTTTTCCTCTCCTCCTCCTGCTCCTCCAGGCCCACCGCCGGGTCCCACCAAGACCAGGCCATCGCTGGCCCCGATCAGCCCATCAAGCCCCCTGCCGCCGCCACCCACCACCGCCTCAGCGACGGCGTTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.04

Weight (kDa)

4.75

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	6 cut(s)	54, 102, 186, 246, 249, 262
AfiI	CCNNNNNNNGG	3 cut(s)	188, 189, 205
AjnI	CCWGG	2 cut(s)	176, 204
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
AoxI	GGCC	3 cut(s)	179, 207, 217
ApeKI	GCWGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	180, 192, 218
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	218, 239
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	178, 206
BcnI	CCSGG	1 cut(s)	190
BisI	GCNGC	3 cut(s)	79, 246, 249
BlsI	GCNGC	3 cut(s)	80, 247, 250
Bme1390I	CCNGG	3 cut(s)	178, 190, 206
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	180, 192, 218
BmiI	GGNNCC	4 cut(s)	40, 193, 194, 220
BmrFI	CCNGG	3 cut(s)	178, 190, 206
BmsI	GCATC	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 189, 205
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	178, 206
BseLI	CCNNNNNNNGG	3 cut(s)	188, 189, 205
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	3 cut(s)	151, 154, 163
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	181, 209, 219
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	188, 189, 205
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	181, 209, 219
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	6 cut(s)	54, 102, 186, 246, 249, 262
BspANI	GGCC	3 cut(s)	181, 209, 219
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	4 cut(s)	40, 193, 194, 220
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	178, 206
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	266
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 84, 235
BstNI	CCWGG	2 cut(s)	178, 206
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	144
BstSCI	CCNGG	3 cut(s)	176, 188, 204
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	181, 209, 219
BtgZI	GCGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	180, 192, 218
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	181, 209, 219, 229, 238, 284
CviKI_1	RGCY	6 cut(s)	181, 209, 219, 229, 238, 284
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	176, 204
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	79, 246, 249
Fsp4HI	GCNGC	3 cut(s)	79, 246, 249
GluI	GCNGC	3 cut(s)	79, 246, 249
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	181, 209, 219
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	1 cut(s)	19
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	124
Hpy99I	CGWCG	5 cut(s)	50, 116, 119, 143, 275
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	15, 87
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 84, 235
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	19
KflI	GGGWCCC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	86, 176
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	45
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	41
MnlI	CCTC	8 cut(s)	61, 76, 159, 167, 172, 175, 184, 275
MseI	TTAA	1 cut(s)	286
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	3 cut(s)	178, 190, 206
MvaI	CCWGG	2 cut(s)	178, 206
MwoI	GCNNNNNNNGC	3 cut(s)	62, 84, 235
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	4 cut(s)	40, 193, 194, 220
NspI	RCATGY	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	80, 247, 250
PpuMI	RGGWCCY	1 cut(s)	192
PshAI	GACNNNNGTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	176, 204
PspGI	CCWGG	2 cut(s)	176, 204
PspN4I	GGNNCC	4 cut(s)	40, 193, 194, 220
PspPI	GGNCC	3 cut(s)	180, 192, 218
PspPPI	RGGWCCY	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	3 cut(s)	79, 246, 249
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	180, 192, 218
ScrFI	CCNGG	3 cut(s)	178, 190, 206
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	2 cut(s)	48, 286
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	192
SsiI	CCGC	6 cut(s)	54, 102, 186, 246, 249, 262
StyD4I	CCNGG	3 cut(s)	176, 188, 204
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	111
TauI	GCSGC	2 cut(s)	248, 251
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	78
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	192
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.