Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Forward (+)

50706507 .. 50706758

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGACCAACAACTGCATGTCGGTGCTGTCGTGCGTCAGCACCAACGTCGCCTCCGCCTTCTTCGCCTCCCTGGAGCGCTGCTCCTGCATCAACCTCAGCACCACCGATTTCGAAGACGATGACAACAACATCATCTGCGCCGCCGCCGACGACCACGGCTCCCTCTTGCTCTCCTCCGGGCCCACCTCGGAGACGGCCCAGCCCAATCTCAATCAGCCCGCCCCGGCCGCCCACGAGGTCGCCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

8.62

Weight (kDa)

4.05

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	57, 144, 147, 222, 231, 246
AcoI	YGGCCR	1 cut(s)	228
AfeI	AGCGCT	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	3 cut(s)	182, 198, 228
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	81, 143
AspS9I	GGNCC	3 cut(s)	182, 183, 199
AsuC2I	CCSGG	2 cut(s)	181, 227
AsuII	TTCGAA	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	68
BceAI	ACGGC	2 cut(s)	175, 213
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	2 cut(s)	181, 227
BcoDI	GTCTC	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	5 cut(s)	82, 144, 147, 231, 246
BlsI	GCNGC	5 cut(s)	83, 145, 148, 232, 247
Bme1390I	CCNGG	3 cut(s)	74, 181, 227
BmgT120I	GGNCC	3 cut(s)	182, 183, 199
BmiI	GGNNCC	2 cut(s)	163, 184
BmrFI	CCNGG	3 cut(s)	74, 181, 227
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	181, 227
BsaJI	CCNNGG	4 cut(s)	72, 157, 189, 225
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 146, 176
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	4 cut(s)	72, 157, 189, 225
BseMII	CTCAG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	186
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	184, 200, 230
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	180, 227
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	184, 200, 230
Bsp119I	TTCGAA	1 cut(s)	114
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	186
BspACI	CCGC	6 cut(s)	57, 144, 147, 222, 231, 246
BspANI	GGCC	3 cut(s)	184, 200, 230
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	163, 184
BspT104I	TTCGAA	1 cut(s)	114
BssECI	CCNNGG	4 cut(s)	72, 157, 189, 225
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 143
BstMAI	GTCTC	1 cut(s)	188
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 87, 230
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	72, 179, 225
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	123
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	184, 200, 230
BtgI	CCRYGG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	2 cut(s)	81, 143
Cfr13I	GGNCC	3 cut(s)	182, 183, 199
CseI	GACGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	162, 184, 200, 205, 220, 230
CviKI_1	RGCY	6 cut(s)	162, 184, 200, 205, 220, 230
DdeI	CTNAG	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	186
Eco47III	AGCGCT	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	5 cut(s)	82, 144, 147, 231, 246
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	5 cut(s)	82, 144, 147, 231, 246
GlaI	GCGC	2 cut(s)	80, 142
GluI	GCNGC	5 cut(s)	82, 144, 147, 231, 246
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	184, 200, 230
HapII	CCGG	2 cut(s)	180, 227
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	81, 143
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	79, 141
HinP1I	GCGC	2 cut(s)	79, 141
HpaII	CCGG	2 cut(s)	180, 227
Hpy188I	TCNGA	1 cut(s)	193
Hpy99I	CGWCG	2 cut(s)	53, 155
HpyAV	CCTTC	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	18, 90
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 87, 230
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	79, 141
LmnI	GCTCC	3 cut(s)	76, 89, 167
LpnPI	CCDG	6 cut(s)	59, 86, 100, 193, 215, 240
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	48
MboII	GAAGA	2 cut(s)	55, 128
MhlI	GDGCHC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	64, 79, 107, 176, 187, 199, 232
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	2 cut(s)	180, 227
MspR9I	CCNGG	3 cut(s)	74, 181, 227
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	65, 87, 230
NciI	CCSGG	2 cut(s)	181, 227
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	163, 184
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	83, 145, 148, 232, 247
Psp6I	CCWGG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	163, 184
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	3 cut(s)	182, 183, 199
RseI	CAYNNNNRTG	1 cut(s)	23
SatI	GCNGC	5 cut(s)	82, 144, 147, 231, 246
Sau96I	GGNCC	3 cut(s)	182, 183, 199
ScrFI	CCNGG	3 cut(s)	74, 181, 227
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	4 cut(s)	51, 99, 191, 243
SfaNI	GCATC	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	23
SsiI	CCGC	6 cut(s)	57, 144, 147, 222, 231, 246
StyD4I	CCNGG	3 cut(s)	72, 179, 225
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	114
TauI	GCSGC	4 cut(s)	146, 149, 233, 248
TseI	GCWGC	1 cut(s)	81
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.