Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Reverse (-)

23827104 .. 23827358

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAGACTAGCAACTACATGTCAGTGTTGTCGTGCGTCAGCACCAACGCCGACTCCGACTTCTTCGCCTCACTGGAAAGGTGCTCCTGGATCAATCTTAGCACCACCGATTTCGAAGACGACGACAACAACATCATTTGCACCGACGATGACCACGACTCTCTCTTGCTCTCCTCCGGGCCCACCTCAGAGGCCACCCAGCCCAAGCCCAATCTCAATCAGCCCGCCCTCGCGGCCCAATTGGTCGCCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.07

Weight (kDa)

4.05

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	225, 233, 249
AclWI	GGATC	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	3 cut(s)	179, 192, 234
ApaI	GGGCCC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	179, 180, 235
AsuC2I	CCSGG	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	178
BfaI	CTAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	234, 249
BlsI	GCNGC	2 cut(s)	235, 250
Bme1390I	CCNGG	2 cut(s)	88, 178
BmgT120I	GGNCC	3 cut(s)	179, 180, 235
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	88, 178
BpiI	GAAGAC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse1I	ACTGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	181, 194, 236
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	3 cut(s)	181, 194, 236
Bsp119I	TTCGAA	1 cut(s)	114
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	86, 183
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	3 cut(s)	225, 233, 249
BspANI	GGCC	3 cut(s)	181, 194, 236
BspCNI	CTCAG	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	98, 187
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	86, 176
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	181, 194, 236
BtsIMutI	CAGTG	2 cut(s)	30, 71
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	179, 180, 235
CseI	GACGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	181, 194, 202, 208, 223, 236
CviKI_1	RGCY	6 cut(s)	181, 194, 202, 208, 223, 236
DdeI	CTNAG	2 cut(s)	98, 187
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	234, 249
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	234, 249
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	2 cut(s)	234, 249
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	3 cut(s)	181, 194, 236
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	2 cut(s)	53, 158
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	58, 190
Hpy99I	CGWCG	2 cut(s)	125, 149
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	98, 187
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	59, 73, 100, 190, 212
MaeI	CTAG	1 cut(s)	9
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	55, 128
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	86, 183
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	47, 152
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	79, 184, 184, 196, 239
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	88, 178
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	114
PciI	ACATGT	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 120, 153
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	235, 250
PleI	GAGTC	2 cut(s)	47, 152
PpsI	GAGTC	2 cut(s)	47, 152
PscI	ACATGT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	3 cut(s)	179, 180, 235
RseI	CAYNNNNRTG	1 cut(s)	23
SatI	GCNGC	2 cut(s)	234, 249
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	3 cut(s)	179, 180, 235
SchI	GAGTC	2 cut(s)	47, 152
ScrFI	CCNGG	2 cut(s)	88, 178
SduI	GDGCHC	2 cut(s)	86, 183
SetI	ASST	2 cut(s)	83, 188
SfuI	TTCGAA	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	225, 233, 249
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	86, 176
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	239
TauI	GCSGC	2 cut(s)	236, 251
TscAI	CASTG	2 cut(s)	30, 78
TspRI	CASTG	2 cut(s)	30, 78
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.