Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Forward (+)

14526504 .. 14526755

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGAACAACAACTGCATGTCGGTGCTGTCATGCGTCAGCACCAACGTGGCCTCCGCCTTCTTCGCCTCCCTGGAGCGCTGCTCCTGCATCAATCTCAGCACCACCGATTTCGAAGACGACAACAACTTCTCCGCCGCCGATGACCACGGCTCTCTCTTGCTCTCCTCCGGCCCCACCTCCGAGCCCAATCTCAATCAGCCCGCCCCCGCTTCCGCCGCCGCCGCCGCAGCCCAGGAGGTTCCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

8.51

Weight (kDa)

4.05

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	72, 234
AleI	CACNNNNGTG	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	3 cut(s)	51, 172, 246
ApeKI	GCWGC	2 cut(s)	81, 230
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	68, 242
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	74, 236
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	7 cut(s)	82, 138, 219, 222, 225, 228, 231
BlsI	GCNGC	7 cut(s)	83, 139, 220, 223, 226, 229, 232
Bme1390I	CCNGG	2 cut(s)	74, 236
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	175, 243
BmrFI	CCNGG	2 cut(s)	74, 236
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	72, 148, 234
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 116, 146
BseBI	CCWGG	2 cut(s)	74, 236
BseDI	CCNNGG	3 cut(s)	72, 148, 234
BseMII	CTCAG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	68, 242
BshFI	GGCC	3 cut(s)	53, 174, 248
BsiSI	CCGG	2 cut(s)	171, 245
BsnI	GGCC	3 cut(s)	53, 174, 248
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	189
BspANI	GGCC	3 cut(s)	53, 174, 248
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	175, 243
BspT104I	TTCGAA	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	72, 148, 234
Bst2UI	CCWGG	2 cut(s)	74, 236
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 87, 218, 224, 227, 230
BstNI	CCWGG	2 cut(s)	74, 236
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	72, 234
BstV1I	GCAGC	2 cut(s)	68, 242
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	53, 174, 248
BtgI	CCRYGG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	25
CviAII	CATG	2 cut(s)	19, 33
CviJI	RGCY	7 cut(s)	53, 153, 174, 187, 202, 233, 248
CviKI_1	RGCY	7 cut(s)	53, 153, 174, 187, 202, 233, 248
DdeI	CTNAG	1 cut(s)	98
EciI	GGCGGA	3 cut(s)	46, 124, 205
Eco24I	GRGCYC	1 cut(s)	189
Eco47III	AGCGCT	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	72, 234
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	2 cut(s)	22, 36
FaiI	YATR	2 cut(s)	20, 34
FatI	CATG	2 cut(s)	18, 32
FauI	CCCGC	2 cut(s)	211, 217
Fnu4HI	GCNGC	7 cut(s)	82, 138, 219, 222, 225, 228, 231
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	7 cut(s)	82, 138, 219, 222, 225, 228, 231
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	7 cut(s)	82, 138, 219, 222, 225, 228, 231
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	53, 174, 248
HapII	CCGG	2 cut(s)	171, 245
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	22, 36
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	171, 245
Hpy188I	TCNGA	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	18, 90
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 87, 218, 224, 227, 230
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	22, 36
HspAI	GCGC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	76, 89
LpnPI	CCDG	6 cut(s)	59, 86, 100, 184, 221, 248
Lsp1109I	GCAGC	2 cut(s)	68, 242
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	48
MboII	GAAGA	2 cut(s)	55, 128
MhlI	GDGCHC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	64, 79, 178, 190, 232
MslI	CAYNNNNRTG	2 cut(s)	23, 47
MspI	CCGG	2 cut(s)	171, 245
MspR9I	CCNGG	2 cut(s)	74, 236
MvaI	CCWGG	2 cut(s)	74, 236
MwoI	GCNNNNNNNGC	6 cut(s)	65, 87, 218, 224, 227, 230
NlaIII	CATG	2 cut(s)	22, 36
NlaIV	GGNNCC	2 cut(s)	175, 243
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	47
PkrI	GCNGC	7 cut(s)	83, 139, 220, 223, 226, 229, 232
Psp6I	CCWGG	2 cut(s)	72, 234
PspGI	CCWGG	2 cut(s)	72, 234
PspN4I	GGNNCC	2 cut(s)	175, 243
PspPI	GGNCC	1 cut(s)	173
RseI	CAYNNNNRTG	2 cut(s)	23, 47
SatI	GCNGC	7 cut(s)	82, 138, 219, 222, 225, 228, 231
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	74, 236
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	51, 182, 243
SfaNI	GCATC	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	23, 47
StyD4I	CCNGG	2 cut(s)	72, 234
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	114
TauI	GCSGC	5 cut(s)	140, 221, 224, 227, 230
TseI	GCWGC	2 cut(s)	81, 230
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.