Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Forward (+)

31535160 .. 31535474

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1224000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGAGCCAGAGCCAGAGCCAGAGCTCGTGCCTGTCGTACGAGAAGATCAACGGCGTCGCCAGCTGGCTTGGGACCCACGTTGCCTCCGCCTTCTTCAACTCCCTCGAGCGTTGCTCCTGCATCAACCTCTCCACCTCCGATGACCAGGAAACCAACCCCGAGGAGGCCCACGACCGCCCCCTCATGCTCTTCGCCTCCCGCTCCGTCAACCTCAGCGACCACCGCCCTCACTACATTTTTTCCTCTTCCTCCGCCTCCTCCTCCTCCTCCTCCACCCCCCCACCAAAAGACGTCGTCAACCTCCCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.31

Weight (kDa)

5.11

Isoelectric Point (pI)

76.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	5 cut(s)	90, 178, 202, 226, 255
AcyI	GRCGYC	2 cut(s)	57, 294
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	27, 66
AluI	AGCT	2 cut(s)	27, 66
Alw21I	GWGCWC	1 cut(s)	29
Ama87I	CYCGRG	2 cut(s)	107, 161
AoxI	GGCC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	75, 169
AvaI	CYCGRG	2 cut(s)	107, 161
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	2 cut(s)	107, 161
BmgT120I	GGNCC	2 cut(s)	75, 169
BmiI	GGNNCC	2 cut(s)	76, 77
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu10I	CCTNAGC	1 cut(s)	215
BsaHI	GRCGYC	2 cut(s)	57, 294
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	229
BseRI	GAGGAG	6 cut(s)	179, 250, 253, 256, 259, 262
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	2 cut(s)	107, 161
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	2 cut(s)	107, 161
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	5 cut(s)	90, 178, 202, 226, 255
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	76, 77
BspQI	GCTCTTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	2 cut(s)	57, 294
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	197, 253
BstACI	GRCGYC	2 cut(s)	57, 294
BstC8I	GCNNGC	2 cut(s)	64, 68
BstDEI	CTNAG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 225
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	64, 68
Cfr13I	GGNCC	2 cut(s)	75, 169
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	7 cut(s)	9, 15, 21, 27, 66, 70, 170
CviKI_1	RGCY	7 cut(s)	9, 15, 21, 27, 66, 70, 170
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	197, 253
EarI	CTCTTC	2 cut(s)	197, 253
EciI	GGCGGA	2 cut(s)	79, 244
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	107, 161
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	170
HgaI	GACGC	1 cut(s)	46
Hin1I	GRCGYC	2 cut(s)	57, 294
Hin1II	CATG	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	211, 301
HindII	GTYRAC	2 cut(s)	211, 301
Hpy166II	GTNNAC	2 cut(s)	211, 301
Hpy188I	TCNGA	2 cut(s)	142, 314
Hpy8I	GTNNAC	2 cut(s)	211, 301
Hpy99I	CGWCG	2 cut(s)	62, 299
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	81, 294
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 225
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	81, 294
Hsp92I	GRCGYC	2 cut(s)	57, 294
Hsp92II	CATG	1 cut(s)	190
KflI	GGGWCCC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	122, 209
LpnPI	CCDG	9 cut(s)	23, 29, 35, 47, 52, 76, 133, 134, 161
LweI	GCATC	1 cut(s)	132
MaeII	ACGT	2 cut(s)	81, 294
MalI	GATC	1 cut(s)	50
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	58, 88, 184, 240
MhlI	GDGCHC	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	63, 225
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	76, 77
PaeR7I	CTCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
Pfl23II	CGTACG	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	76, 77
PspPI	GGNCC	2 cut(s)	75, 169
PspPPI	RGGWCCY	1 cut(s)	75
PspXI	VCTCGAGB	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	2 cut(s)	75, 169
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	8 cut(s)	29, 68, 84, 132, 140, 216, 297, 306
SfaNI	GCATC	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	5 cut(s)	90, 178, 202, 226, 255
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	147
TaiI	ACGT	2 cut(s)	84, 297
TaqI	TCGA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	75
XhoI	CTCGAG	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.