Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005601

Physical Location & Seq

Genomic Coordinates Forward (+)

35555429 .. 35555737

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1294800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGGAGCCAGAGCCAGAGCTCGTGCCTGTCGTACGAGAAGATCAACGGCGTCGCCAGTTGGCTTGGGACCCACGTGGCCTCCGCCTTCTTCGCCTCCCTTGAGCGCTGCTCCTGCATCAACCTCTCCACCTCCGACGACCACGAAACCAACCCCGAGGAGGCCCACGACCGCCCCCTCATGCTCTTCGCCTCCCGCTCCGTCAACCTCAGCGACCACCGCCCTCACTACGTTTCTTCCACTTCCTCCGCCTCCGCCTCCTCCTCCTCCGCCCCTCCACCGAACGACGTCGTCAACCTCCCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

10.87

Weight (kDa)

5.31

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64584
fragaria_vesca	FvH4_7g16950
malus_domestica	MD01G1084100.v1.1 MD01G1224000.v1.1 MD07G1294800.v1.1
prunus_persica	Prupe.2G191800_v2.0.a1 Prupe.2G191800_v2.0.a1 Prupe.2G314400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360201 RchiOBHm_Chr1g0381731
rosa_laevigata	RLG00000026212
rosa_multiflora	Rmu_co8030964.1_g000001 Rmu_sc0004579.1_g000007 Rmu_ssc0000316.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278490
rosa_rugosa	Rorug01G0275900 Rorug01G0430500 Rorug07G0079800
rosa_samantha	Rh1AG289600 Rh1BG255200 Rh1BG411200 Rh1DG284700 Rh1DG443000 Rh5AG144000 Rh5BG201700 Rh5DG143000
rosa_wichuraiana	Rw1G039610 Rw5G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccBSI	CCGCTC	1 cut(s)	198
AciI	CCGC	7 cut(s)	84, 172, 196, 220, 249, 255, 270
AcvI	CACGTG	1 cut(s)	76
AcyI	GRCGYC	2 cut(s)	51, 288
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	107
AoxI	GGCC	2 cut(s)	78, 162
ApeKI	GCWGC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	69, 163
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	22
BbrPI	CACGTG	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	69, 163
BmiI	GGNNCC	3 cut(s)	8, 70, 71
BmsI	GCATC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
Bpu10I	CCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	76
BsaHI	GRCGYC	2 cut(s)	51, 288
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	4 cut(s)	173, 250, 253, 256
BseXI	GCAGC	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	80, 164
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	155
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	80, 164
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	7 cut(s)	84, 172, 196, 220, 249, 255, 270
BspANI	GGCC	2 cut(s)	80, 164
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	8, 70, 71
BspQI	GCTCTTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	2 cut(s)	51, 288
BssSI	CACGAG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	2 cut(s)	51, 288
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 114, 219
BstV1I	GCAGC	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	80, 164
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	69, 163
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	9, 15, 21, 64, 80, 164
CviKI_1	RGCY	6 cut(s)	9, 15, 21, 64, 80, 164
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	4 cut(s)	73, 238, 244, 259
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	69
Eco47III	AGCGCT	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	1 cut(s)	184
FaiI	YATR	1 cut(s)	182
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	109
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	80, 164
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	108
Hin1I	GRCGYC	2 cut(s)	51, 288
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	2 cut(s)	205, 295
HindII	GTYRAC	2 cut(s)	205, 295
Hpy166II	GTNNAC	2 cut(s)	205, 295
Hpy188I	TCNGA	2 cut(s)	136, 308
Hpy8I	GTNNAC	2 cut(s)	205, 295
Hpy99I	CGWCG	4 cut(s)	56, 140, 290, 293
HpyAV	CCTTC	1 cut(s)	97
HpyCH4IV	ACGT	3 cut(s)	75, 231, 288
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 114, 219
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	3 cut(s)	75, 231, 288
Hsp92I	GRCGYC	2 cut(s)	51, 288
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	1 cut(s)	106
KflI	GGGWCCC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	42
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	3 cut(s)	6, 116, 203
LpnPI	CCDG	5 cut(s)	23, 29, 41, 70, 127
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	126
MaeII	ACGT	3 cut(s)	75, 231, 288
MalI	GATC	1 cut(s)	44
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	52, 82, 178, 228
MhlI	GDGCHC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	92, 114, 219
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	3 cut(s)	8, 70, 71
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
Pfl23II	CGTACG	1 cut(s)	33
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	110
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	69
PspCI	CACGTG	1 cut(s)	76
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	8, 70, 71
PspPI	GGNCC	2 cut(s)	69, 163
PspPPI	RGGWCCY	1 cut(s)	69
PsyI	GACNNNGTC	1 cut(s)	290
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	69, 163
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	8 cut(s)	23, 78, 126, 134, 210, 234, 291, 300
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SsiI	CCGC	7 cut(s)	84, 172, 196, 220, 249, 255, 270
SstI	GAGCTC	1 cut(s)	23
TaiI	ACGT	3 cut(s)	78, 234, 291
TseI	GCWGC	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	69
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.