Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008800

Physical Location & Seq

Genomic Coordinates Reverse (-)

29570119 .. 29572777

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGCTTCACTTGCTTCAATTCCATTCTCGCGCAATGGTCTCTCTCTCCAGTTCTCCCCAACGAAACGCCATTGTTTCACAGTTCCAGAATTCCACTCACCTATGCGTGTGTGTTGCTCTGCATCTAGGGATGGTCATGAATTAAAGGAAAACTTGTCTCAACTGAAGCAACTTAAGAATGTAGCTTGTGGCATTCTTGCTGTTTGGGCTGTGACTGCTGCCTCGCCTGTAATTGCTGCTGGTCAGAGGTTGCCTCCATTGTCAACTGATCCAAGTCGGTGTGAGCGTGCATTTGTTGGCAACACAATAGGTCAAGCAAATGGAGTTTATGACAAGGCAATTGATCTCCGTTTCTGTGATTACACAAATGAGAAGTCCAACCTGAAGGGAAAGAGTCTTGCAGCAGCACTCATGTCTGAAGCAAAATTTGATGGTGCAGACATGTCAGAAGTTGTGATGTCAAAGGCTTATGCTGCAGGAGCTAGCTTCAAGGGTACAGATTTCTCAAATGCAGTTCTAGACCGAGTTAACTTTGAGAAAGCTAATCTGCAAGGAGCTTTGTTTAAGAACACTGTGTTATCAGGCTCCACCTTTAATGAAGCAAAACTTGACGGTGCCGTGTTTGAGGATACCATTATCGGGTACATTGATCTTCAGAAACTCTGTAGAAATACATCTCTCAATGAGGAAGGAAGAGCAACTCTGGGGTGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

240

Amino Acids

25.72

Weight (kDa)

8.39

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53490 AT5G53490 AT5G53490 AT5G53490
fragaria_vesca	FvH4_7g32120
malus_domestica	MD01G1223900.v1.1 MD07G1294700.v1.1
prunus_persica	Prupe.2G314300_v2.0.a1 Prupe.2G314300_v2.0.a1
pyrus_communis	pycom01g23290 pycom07g26730
rosa_chinensis	RchiOBHm_Chr1g0381721
rosa_laevigata	RLG00000026213
rosa_multiflora	Rmu_sc0004579.1_g000006 Rmu_sc0009713.1_g000001 Rmu_ssc0000316.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278500
rosa_rugosa	Rorug01G0430500
rosa_samantha	Rh1AG453900 Rh1BG411100 Rh1CG425500 Rh1DG442900
rosa_wichuraiana	Rw1G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AccII	CGCG	1 cut(s)	34
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	92, 428
AcuI	CTGAAG	4 cut(s)	188, 407, 441, 641
AfaI	GTAC	2 cut(s)	499, 647
AfiI	CCNNNNNNNGG	1 cut(s)	642
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	21, 493
AluBI	AGCT	5 cut(s)	188, 485, 489, 545, 560
AluI	AGCT	5 cut(s)	188, 485, 489, 545, 560
Alw26I	GTCTC	2 cut(s)	47, 165
AlwI	GGATC	1 cut(s)	266
ApeKI	GCWGC	6 cut(s)	5, 221, 239, 404, 407, 476
ApoI	RAATTY	2 cut(s)	92, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	93
AsuNHI	GCTAGC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	617
BbvI	GCAGC	5 cut(s)	208, 226, 416, 419, 463
BccI	CCATC	2 cut(s)	128, 428
BceAI	ACGGC	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	47, 165
BfaI	CTAG	3 cut(s)	129, 486, 521
BfmI	CTRYAG	2 cut(s)	477, 667
BfrI	CTTAAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	6 cut(s)	6, 222, 240, 405, 408, 477
BlsI	GCNGC	6 cut(s)	7, 223, 241, 406, 409, 478
BmiI	GGNNCC	2 cut(s)	589, 619
BmsI	GCATC	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BpmI	CTGGAG	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	642
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	642
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	5 cut(s)	208, 226, 416, 419, 463
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	642
BsmAI	GTCTC	2 cut(s)	47, 165
BsmI	GAATGC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	271, 346, 652
BspFNI	CGCG	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	589, 619
BspMAI	CTGCAG	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	691
BspT107I	GGYRCC	1 cut(s)	617
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	271, 346, 652
Bst4CI	ACNGT	3 cut(s)	85, 577, 617
Bst6I	CTCTTC	1 cut(s)	691
BstAFI	CTTAAG	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	291, 487
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	274, 349, 655
BstMAI	GTCTC	2 cut(s)	47, 165
BstMBI	GATC	3 cut(s)	271, 346, 652
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 209, 218, 476, 482
BstNSI	RCATGY	1 cut(s)	448
BstSFI	CTRYAG	2 cut(s)	477, 667
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	5 cut(s)	208, 226, 416, 419, 463
BsuI	GTATCC	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	291, 487
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	498, 646
CviAII	CATG	3 cut(s)	140, 415, 445
CviJI	RGCY	9 cut(s)	5, 188, 212, 470, 485, 489, 545, 560, 588
CviKI_1	RGCY	9 cut(s)	5, 188, 212, 470, 485, 489, 545, 560, 588
CviQI	GTAC	2 cut(s)	498, 646
DpnI	GATC	3 cut(s)	273, 348, 654
DpnII	GATC	3 cut(s)	271, 346, 652
Eam1104I	CTCTTC	1 cut(s)	691
EarI	CTCTTC	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	47
Eco57I	CTGAAG	4 cut(s)	188, 407, 441, 641
EcoRI	GAATTC	1 cut(s)	92
FaeI	CATG	3 cut(s)	143, 418, 448
FaiI	YATR	6 cut(s)	107, 141, 333, 416, 446, 474
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 594, 626
FatI	CATG	3 cut(s)	139, 414, 444
Fnu4HI	GCNGC	6 cut(s)	6, 222, 240, 405, 408, 477
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	6, 222, 240, 405, 408, 477
FspBI	CTAG	3 cut(s)	129, 486, 521
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	6 cut(s)	6, 222, 240, 405, 408, 477
GsuI	CTGGAG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	143, 418, 448
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	2 cut(s)	267, 532
HindII	GTYRAC	2 cut(s)	267, 532
HinfI	GANTC	1 cut(s)	397
HpaI	GTTAAC	1 cut(s)	532
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	267, 532
Hpy188I	TCNGA	4 cut(s)	249, 421, 451, 660
Hpy188III	TCNNGA	3 cut(s)	89, 140, 521
Hpy8I	GTNNAC	2 cut(s)	267, 532
HpyAV	CCTTC	2 cut(s)	382, 686
HpyCH4III	ACNGT	3 cut(s)	85, 577, 617
HpyCH4V	TGCA	7 cut(s)	125, 293, 404, 440, 479, 515, 553
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 209, 218, 476, 482
Hsp92II	CATG	3 cut(s)	143, 418, 448
HspAI	GCGC	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	271, 346, 652
LguI	GCTCTTC	1 cut(s)	691
LmnI	GCTCC	3 cut(s)	482, 557, 593
LpnPI	CCDG	8 cut(s)	65, 102, 228, 243, 398, 465, 570, 692
Lsp1109I	GCAGC	5 cut(s)	208, 226, 416, 419, 463
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	3 cut(s)	129, 486, 521
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	273, 348, 654
MboI	GATC	3 cut(s)	271, 346, 652
MboII	GAAGA	2 cut(s)	647, 708
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	6 cut(s)	21, 92, 143, 234, 342, 428
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	235, 243, 267, 622, 682
MseI	TTAA	5 cut(s)	146, 177, 531, 567, 597
MspCI	CTTAAG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	5 cut(s)	14, 209, 218, 476, 482
NdeII	GATC	3 cut(s)	271, 346, 652
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	3 cut(s)	143, 418, 448
NlaIV	GGNNCC	2 cut(s)	589, 619
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	448
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	1 cut(s)	195
PkrI	GCNGC	6 cut(s)	7, 223, 241, 406, 409, 478
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PscI	ACATGT	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	589, 619
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	2 cut(s)	499, 647
RsaNI	GTAC	2 cut(s)	498, 646
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	5 cut(s)	146, 177, 531, 567, 597
SatI	GCNGC	6 cut(s)	6, 222, 240, 405, 408, 477
Sau3AI	GATC	3 cut(s)	271, 346, 652
SchI	GAGTC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	2 cut(s)	477, 667
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	6 cut(s)	21, 92, 143, 234, 342, 428
SspMI	CTAG	3 cut(s)	129, 486, 521
TaaI	ACNGT	3 cut(s)	85, 577, 617
TaqI	TCGA	1 cut(s)	715
TaqII	GACCGA	1 cut(s)	540
TasI	AATT	6 cut(s)	21, 92, 143, 234, 342, 428
Tru1I	TTAA	5 cut(s)	146, 177, 531, 567, 597
Tru9I	TTAA	5 cut(s)	146, 177, 531, 567, 597
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	6 cut(s)	5, 221, 239, 404, 407, 476
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	156, 615
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	580
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	2 cut(s)	92, 428
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	1 cut(s)	448
XspI	CTAG	3 cut(s)	129, 486, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.