pycom07g26730

Thylakoid lumenal 17.4 kDa protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
26673985 .. 26676376
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26730.4

Sequence Viewer

Length: 711 bp
ATGGCTGCTTCACTTTCTTCATCGATTCTTCCGTCTCGAAACGGCGTTTCTCTCCAATTCTCCCAGACGAAACGCCCGCAGCTCCACTCGCCGCCGCGCGTATTTTGCTCCGCTTATAGGGATGGTCATGAGACAAAGGAGGAATTGAATCAGTGGAAGCAAGTTAAGAATGCAGCTTGTGGGATTCTTGCTGTTTGGGCAGTGACTACCGCTGCCTCACCTGTAATTGCTGCTGGTCAGAGGTTGCCTCCATTGTCTACTGATCCAAAGCGATGTGAGGTTGCATTTGTTGGAAATACGATAGGCCAGGCAAATGGAGTTTACGACAAGGCAATAGATCTCCGCTTCTGTGATTACACAAATGAGAAGTCCAATCTTAAGGGAAAGAGTCTTGCAGCAGCACTCATGTCCGGAGCCAAATTTGATGGCGCAGACATGACAGAAGTTGTGATGTCAAAAGCTTATGCTGCAGGAGCCAGCTTCAAGGGAACAAACTTCTCGAACGCAGTTCTAGACCGGGTTAACTTTGAGAAAGCGAATCTGCAAGGAGCTTTGTTTATTAACACTGTCTTATCAGGTTCCACCTTCAACGAAGCAAACCTTGACGGTGTGTTTTTCGAGGACACCATTATAGGGTACATTGATCTTCAGAAAATTTGTAGAAATACAACTATCAATGAGGAAGGAAGAGCTACCCTAGGGTGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

237

Amino Acids

25.41

Weight (kDa)

8.5

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 257
AccII CGCG 2 cut(s) 97, 99
AccIII TCCGGA 1 cut(s) 410
AciI CCGC 6 cut(s) 77, 92, 95, 111, 210, 343
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 2 cut(s) 419, 654
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 117, 633
AflII CTTAAG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 148, 484, 589
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 6 cut(s) 82, 176, 461, 480, 551, 692
AluI AGCT 6 cut(s) 82, 176, 461, 480, 551, 692
Alw26I GTCTC 2 cut(s) 39, 125
AlwI GGATC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 410
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 8 cut(s) 5, 79, 173, 212, 230, 395, 398, 467
ApoI RAATTY 2 cut(s) 419, 654
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspA2I CCTAGG 1 cut(s) 697
AspLEI GCGC 2 cut(s) 99, 431
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 210
AvrII CCTAGG 1 cut(s) 697
BbvI GCAGC 7 cut(s) 91, 185, 199, 217, 407, 410, 454
BccI CCATC 2 cut(s) 116, 419
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 2 cut(s) 39, 125
BfaI CTAG 2 cut(s) 512, 698
BfmI CTRYAG 1 cut(s) 468
BfrI CTTAAG 1 cut(s) 377
BglII AGATCT 1 cut(s) 337
BlnI CCTAGG 1 cut(s) 697
Bme1390I CCNGG 2 cut(s) 308, 518
BmiI GGNNCC 3 cut(s) 415, 475, 580
BmrFI CCNGG 2 cut(s) 308, 518
BplI GAGNNNNNCTC 2 cut(s) 232, 264
BpuMI CCSGG 1 cut(s) 518
Bsa29I ATCGAT 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 697
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 633
BseAI TCCGGA 1 cut(s) 410
BseBI CCWGG 1 cut(s) 308
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 697
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 117, 633
BseXI GCAGC 7 cut(s) 91, 185, 199, 217, 407, 410, 454
Bsh1236I CGCG 2 cut(s) 97, 99
BshFI GGCC 1 cut(s) 306
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 2 cut(s) 411, 517
BslI CCNNNNNNNGG 2 cut(s) 117, 633
BsmAI GTCTC 2 cut(s) 39, 125
BsmBI CGTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 306
Bsp13I TCCGGA 1 cut(s) 410
Bsp143I GATC 3 cut(s) 262, 337, 643
BspACI CCGC 6 cut(s) 77, 92, 95, 111, 210, 343
BspANI GGCC 1 cut(s) 306
BspDI ATCGAT 1 cut(s) 23
BspEI TCCGGA 1 cut(s) 410
BspFNI CGCG 2 cut(s) 97, 99
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 415, 475, 580
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 682
BspTI CTTAAG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 3 cut(s) 262, 337, 643
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 568, 608
Bst6I CTCTTC 1 cut(s) 682
BstAFI CTTAAG 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 77, 478
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 2 cut(s) 97, 99
BstHHI GCGC 2 cut(s) 99, 431
BstKTI GATC 3 cut(s) 265, 340, 646
BstMAI GTCTC 2 cut(s) 39, 125
BstMBI GATC 3 cut(s) 262, 337, 643
BstMWI GCNNNNNNNGC 5 cut(s) 88, 105, 197, 467, 473
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 306, 516
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 2 cut(s) 97, 99
BstV1I GCAGC 7 cut(s) 91, 185, 199, 217, 407, 410, 454
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 158, 207, 564
Cac8I GCNNGC 2 cut(s) 77, 478
CciI TCATGA 1 cut(s) 127
CfoI GCGC 2 cut(s) 99, 431
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 1 cut(s) 637
CviAII CATG 3 cut(s) 128, 406, 436
CviQI GTAC 1 cut(s) 637
DpnI GATC 3 cut(s) 264, 339, 645
DpnII GATC 3 cut(s) 262, 337, 643
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 3 cut(s) 131, 409, 439
FaiI YATR 6 cut(s) 117, 129, 407, 437, 465, 632
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 3 cut(s) 127, 405, 435
FauI CCCGC 1 cut(s) 84
FblI GTMKAC 1 cut(s) 257
FokI GGATG 1 cut(s) 134
FspBI CTAG 2 cut(s) 512, 698
GlaI GCGC 2 cut(s) 98, 430
HaeIII GGCC 1 cut(s) 306
HapII CCGG 2 cut(s) 411, 517
HhaI GCGC 2 cut(s) 99, 431
Hin1II CATG 3 cut(s) 131, 409, 439
Hin6I GCGC 2 cut(s) 97, 429
HinP1I GCGC 2 cut(s) 97, 429
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 5 cut(s) 25, 148, 184, 388, 538
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 2 cut(s) 411, 517
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 258, 322, 523
Hpy188I TCNGA 2 cut(s) 240, 651
Hpy188III TCNNGA 5 cut(s) 36, 128, 411, 499, 512
Hpy8I GTNNAC 3 cut(s) 258, 322, 523
HpyAV CCTTC 2 cut(s) 595, 677
HpyCH4III ACNGT 2 cut(s) 568, 608
HpyCH4V TGCA 5 cut(s) 173, 284, 395, 470, 544
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 105, 197, 467, 473
Hsp92II CATG 3 cut(s) 131, 409, 439
HspAI GCGC 2 cut(s) 97, 429
Kpn2I TCCGGA 1 cut(s) 410
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 3 cut(s) 262, 337, 643
LguI GCTCTTC 1 cut(s) 682
LmnI GCTCC 5 cut(s) 87, 113, 413, 473, 548
Lsp1109I GCAGC 7 cut(s) 91, 185, 199, 217, 407, 410, 454
MaeI CTAG 2 cut(s) 512, 698
MaeIII GTNAC 1 cut(s) 202
MalI GATC 3 cut(s) 264, 339, 645
MboI GATC 3 cut(s) 262, 337, 643
MboII GAAGA 4 cut(s) 9, 20, 638, 699
MflI RGATCY 1 cut(s) 337
MluCI AATT 5 cut(s) 56, 143, 225, 419, 654
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 7 cut(s) 133, 226, 234, 258, 271, 613, 673
MroI TCCGGA 1 cut(s) 410
MseI TTAA 4 cut(s) 165, 378, 522, 561
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 2 cut(s) 411, 517
MspR9I CCNGG 2 cut(s) 308, 518
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 2 cut(s) 97, 99
MwoI GCNNNNNNNGC 5 cut(s) 88, 105, 197, 467, 473
NciI CCSGG 1 cut(s) 518
NdeII GATC 3 cut(s) 262, 337, 643
NlaIII CATG 3 cut(s) 131, 409, 439
NlaIV GGNNCC 3 cut(s) 415, 475, 580
NmuCI GTSAC 1 cut(s) 202
PagI TCATGA 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 682
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 4 cut(s) 25, 148, 184, 538
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 3 cut(s) 415, 475, 580
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 682
SaqAI TTAA 4 cut(s) 165, 378, 522, 561
Sau3AI GATC 3 cut(s) 262, 337, 643
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 308, 518
SfcI CTRYAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 5 cut(s) 56, 143, 225, 419, 654
SsiI CCGC 6 cut(s) 77, 92, 95, 111, 210, 343
SspMI CTAG 2 cut(s) 512, 698
StyD4I CCNGG 2 cut(s) 306, 516
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 2 cut(s) 568, 608
TaqI TCGA 5 cut(s) 23, 37, 500, 618, 706
TasI AATT 5 cut(s) 56, 143, 225, 419, 654
TauI GCSGC 2 cut(s) 94, 97
TfiI GAWTC 4 cut(s) 25, 148, 184, 538
Tru1I TTAA 4 cut(s) 165, 378, 522, 561
Tru9I TTAA 4 cut(s) 165, 378, 522, 561
TscAI CASTG 3 cut(s) 158, 207, 571
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 8 cut(s) 5, 79, 173, 212, 230, 395, 398, 467
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 3 cut(s) 158, 207, 571
Vha464I CTTAAG 1 cut(s) 377
XapI RAATTY 2 cut(s) 419, 654
XbaI TCTAGA 1 cut(s) 511
XmaJI CCTAGG 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 512, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.