AT5G54570

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
22167636 .. 22170235
2600 bp
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UTR
Exon/CDS
Intron
AT5G54570.2

Sequence Viewer

Length: 1608 bp
ATGGAATCTTTAATGAGACTCGTCTTAGTTCTGTTTCCGTTCTTCGTCGTCTTCTTCGTACCTCTTGATCACGTTTCTTCAGAATCTATCAGCAGAGCAAATTTTCCAGATGGATTTGTATTCGGAACAGCTTCTTCAGCTTACCAGTTCGAAGGAGCTGTGAAAGAAGGAAACAAAGGAGAAAGCATATGGGACACTTTCACGAAGGAGAAACCAGGAAAGATACTGGATTTCAGCAATGCGGATACTACGGTTGATCAATATCATAGGTTTCACAATGACATAGACCTGATGAAAGATCTGAGAATGGATGCTTACAGATTCTCTATATCTTGGTCAAGAATATTCCCTAATGGAACAGGGGAAGTAAACCCAGATGGAGTTAAGTACTATAACAGCCTAATAGATGCTCTTTTAGCCAAAGGAATCAAACCTTATGTGACATTGTATCACTGGGATCTCCCACAAGCCTTAGAAGACAGATATGAAGGATGGCTAAGCAGAGAAGTGGTGGATGATTTTGAGCATTATGCATTCACCTGTTTCAAAGCATTTGGAGATAGAGTGAAGTACTGGATCACTTTCAATGAGCCTCATGGGGTATCGATCCAAGGCTATGACACAGGGATACAAGCTCCAGGAAGGTGCTCACTTCTGGGACATTGGTTCTGTAAGAAGGGGAAGTCATCGGTCGAACCGTATATTGTAGCTCATAACATTCTGTTGTCTCATGCTGCTGCTTACCATACCTACCAAAGAAACTTTAAGGAGAAACAACGTGGTCAAATCGGGATATCATTAGATGCAAAATGGTATGAGCCAATGTCTGATTGTGATGAGGACAAAGATGCAGCTCGTAGAGCAATGGATTTTGGGCTTGGATGGTTTATGGATCCTCTAATCAATGGAGACTATCCAGCTTCAATGAAGAGTCTAGTGGAAGAGAGACTACCTAAGATAACACCAGAGATGTATAAAACCATAAAAGGGGCATTTGATTACGTGGGAATCAACCACTACACCACATTATACGCGAGGAATGACAGAACTAGGATAAGGAAACTGATTCTACAAGATGCTTCTTCTGATTCAGCCGTGATTACAAGCTCTTTTCGTGGAGGAGTAGCTATAGGAGAAAGAGCAGGGTCAAGCTGGCTACACATTGTCCCATGGGGAATCAGGAAACTGGCAGTGTATGTTAAAGACATATATGGAAACCCACCTGTATTCATCACAGAAAACGGCATGGATGAGAAAAACAGTCCATTCATAGACATGGAAAAAGCATTAAAAGATGACAAGAGGATTGGCTTCCACAGAGATTACCTCTCAAACTTATCAGCTGCCATAAGGAATGATGAATGCGACGTAAGAGGATATTTTGTGTGGTCATTGCTAGACAATTGGGAATGGAACTCAGGATACACGGTCCGGTTTGGGATCTACTATGTTGACTACAAGAACAATCTCACAAGGATACCTAAAGCTTCTGCTCGATGGTTTCAAACAATACTTAGCGGCTCTTCTTCAACATCAGATTCCAGCAAGCTTATTCTACTGGAAGAGGCAACAGAACAACAACAAGAGTACAAATTCCAAGAGAAATGA

Protein Analysis

535

Amino Acids

61.46

Weight (kDa)

5.96

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 1 - 408 4e-130 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1034
AciI CCGC 2 cut(s) 242, 1518
AclWI GGATC 6 cut(s) 465, 584, 601, 887, 900, 1448
AcsI RAATTY 2 cut(s) 100, 1592
AcuI CTGAAG 2 cut(s) 63, 120
AfaI GTAC 4 cut(s) 60, 389, 572, 1589
AfiI CCNNNNNNNGG 1 cut(s) 987
AgsI TTSAA 5 cut(s) 547, 586, 924, 1505, 1530
AjnI CCWGG 2 cut(s) 214, 637
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 4 cut(s) 10, 732, 903, 940
AlwI GGATC 6 cut(s) 465, 584, 601, 887, 900, 1448
ApeKI GCWGC 4 cut(s) 734, 737, 851, 1343
ApoI RAATTY 2 cut(s) 100, 1592
Asp700I GAANNNNTTC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 1429
AsuHPI GGTGA 1 cut(s) 529
AsuII TTCGAA 1 cut(s) 150
AvaII GGWCC 1 cut(s) 1429
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BamHI GGATCC 1 cut(s) 892
BarI GAAGNNNNNNTAC 2 cut(s) 933, 965
BbsI GAAGAC 2 cut(s) 43, 483
Bbv12I GWGCWC 1 cut(s) 650
BbvI GCAGC 4 cut(s) 721, 724, 863, 1330
BccI CCATC 5 cut(s) 104, 371, 486, 876, 1491
BceAI ACGGC 2 cut(s) 1079, 1258
BciT130I CCWGG 2 cut(s) 216, 639
BciVI GTATCC 4 cut(s) 238, 621, 1415, 1470
BclI TGATCA 2 cut(s) 67, 256
BcoDI GTCTC 4 cut(s) 10, 732, 903, 940
BfaI CTAG 3 cut(s) 935, 1050, 1397
BfmI CTRYAG 1 cut(s) 1128
BfuI GTATCC 4 cut(s) 238, 621, 1415, 1470
BglII AGATCT 1 cut(s) 298
BisI GCNGC 5 cut(s) 735, 738, 852, 1344, 1519
BlpI GCTNAGC 1 cut(s) 497
BlsI GCNGC 5 cut(s) 736, 739, 853, 1345, 1520
BmcAI AGTACT 2 cut(s) 389, 572
Bme1390I CCNGG 2 cut(s) 216, 639
Bme18I GGWCC 1 cut(s) 1429
BmgT120I GGNCC 1 cut(s) 1429
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 2 cut(s) 216, 639
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 5 cut(s) 301, 397, 793, 838, 1066
BmuI ACTGGG 1 cut(s) 463
BpiI GAAGAC 2 cut(s) 43, 483
BplI GAGNNNNNCTC 2 cut(s) 1311, 1343
BpmI CTGGAG 1 cut(s) 621
Bpu1102I GCTNAGC 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 605
BsaAI YACGTR 1 cut(s) 1003
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 610, 1169
BsaWI WCCGGW 1 cut(s) 1431
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 987
Bse1I ACTGG 6 cut(s) 145, 231, 458, 578, 1191, 1563
Bse3DI GCAATG 3 cut(s) 244, 870, 1391
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 2 cut(s) 216, 639
BseCI ATCGAT 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 610, 1169
BseGI GGATG 5 cut(s) 316, 497, 520, 887, 1255
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 987
BseMI GCAATG 3 cut(s) 244, 870, 1391
BseMII CTCAG 2 cut(s) 293, 1431
BseNI ACTGG 6 cut(s) 145, 231, 458, 578, 1191, 1563
BseRI GAGGAG 1 cut(s) 1134
BseXI GCAGC 4 cut(s) 721, 724, 863, 1330
Bsh1236I CGCG 1 cut(s) 1034
Bsh1285I CGRYCG 1 cut(s) 693
BshVI ATCGAT 1 cut(s) 605
BsiEI CGRYCG 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 650
BsiSI CCGG 1 cut(s) 1432
BslFI GGGAC 3 cut(s) 206, 672, 1151
BslI CCNNNNNNNGG 1 cut(s) 987
BsmAI GTCTC 4 cut(s) 10, 732, 903, 940
BsmFI GGGAC 3 cut(s) 206, 672, 1151
BsmI GAATGC 2 cut(s) 533, 1367
Bsp119I TTCGAA 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 650
Bsp143I GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
Bsp1720I GCTNAGC 1 cut(s) 497
Bsp19I CCATGG 1 cut(s) 1169
BspACI CCGC 2 cut(s) 242, 1518
BspCNI CTCAG 2 cut(s) 294, 1430
BspDI ATCGAT 1 cut(s) 605
BspFNI CGCG 1 cut(s) 1034
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 6 cut(s) 465, 584, 601, 887, 900, 1448
BspQI GCTCTTC 1 cut(s) 1528
BspT104I TTCGAA 1 cut(s) 150
BsrDI GCAATG 3 cut(s) 244, 870, 1391
BsrI ACTGG 6 cut(s) 145, 231, 458, 578, 1191, 1563
BssECI CCNNGG 2 cut(s) 610, 1169
BssMI GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
BssT1I CCWWGG 2 cut(s) 610, 1169
Bst2UI CCWGG 2 cut(s) 216, 639
Bst4CI ACNGT 4 cut(s) 253, 699, 1262, 1429
Bst6I CTCTTC 4 cut(s) 923, 936, 1528, 1557
BstBAI YACGTR 1 cut(s) 1003
BstBI TTCGAA 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 1154, 1547
BstDEI CTNAG 7 cut(s) 25, 302, 472, 497, 954, 1417, 1514
BstDSI CCRYGG 1 cut(s) 1169
BstF5I GGATG 5 cut(s) 316, 497, 520, 887, 1255
BstFNI CGCG 1 cut(s) 1034
BstKTI GATC 8 cut(s) 70, 259, 301, 460, 579, 609, 895, 1443
BstMAI GTCTC 4 cut(s) 10, 732, 903, 940
BstMBI GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
BstMCI CGRYCG 1 cut(s) 693
BstMWI GCNNNNNNNGC 3 cut(s) 137, 416, 860
BstNI CCWGG 2 cut(s) 216, 639
BstSCI CCNGG 2 cut(s) 214, 637
BstSFI CTRYAG 1 cut(s) 1128
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 4 cut(s) 721, 724, 863, 1330
BstV2I GAAGAC 2 cut(s) 43, 483
BstX2I RGATCY 4 cut(s) 298, 457, 892, 1440
BstYI RGATCY 4 cut(s) 298, 457, 892, 1440
Bsu15I ATCGAT 1 cut(s) 605
BsuI GTATCC 4 cut(s) 238, 621, 1415, 1470
BsuTUI ATCGAT 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 1169
BtsCI GGATG 5 cut(s) 316, 497, 520, 887, 1255
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 2 cut(s) 451, 1197
Cac8I GCNNGC 2 cut(s) 1154, 1547
Cfr13I GGNCC 1 cut(s) 1429
ClaI ATCGAT 1 cut(s) 605
CpoI CGGWCCG 1 cut(s) 1429
Csp6I GTAC 4 cut(s) 59, 388, 571, 1588
CspI CGGWCCG 1 cut(s) 1429
CviAII CATG 5 cut(s) 596, 731, 1170, 1246, 1276
CviQI GTAC 4 cut(s) 59, 388, 571, 1588
DdeI CTNAG 7 cut(s) 25, 302, 472, 497, 954, 1417, 1514
DpnI GATC 8 cut(s) 69, 258, 300, 459, 578, 608, 894, 1442
DpnII GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
Eam1104I CTCTTC 4 cut(s) 923, 936, 1528, 1557
EarI CTCTTC 4 cut(s) 923, 936, 1528, 1557
Eco130I CCWWGG 2 cut(s) 610, 1169
Eco32I GATATC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 1429
Eco57I CTGAAG 2 cut(s) 63, 120
EcoRII CCWGG 2 cut(s) 214, 637
EcoRV GATATC 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 610, 1169
EcoT22I ATGCAT 1 cut(s) 535
ErhI CCWWGG 2 cut(s) 610, 1169
FaeI CATG 5 cut(s) 599, 734, 1173, 1249, 1279
FaqI GGGAC 3 cut(s) 206, 672, 1151
FatI CATG 5 cut(s) 595, 730, 1169, 1245, 1275
FauNDI CATATG 1 cut(s) 188
FbaI TGATCA 2 cut(s) 67, 256
Fnu4HI GCNGC 5 cut(s) 735, 738, 852, 1344, 1519
FokI GGATG 5 cut(s) 323, 504, 527, 894, 1262
Fsp4HI GCNGC 5 cut(s) 735, 738, 852, 1344, 1519
FspBI CTAG 3 cut(s) 935, 1050, 1397
GluI GCNGC 5 cut(s) 735, 738, 852, 1344, 1519
GsuI CTGGAG 1 cut(s) 621
HapII CCGG 1 cut(s) 1432
Hin1II CATG 5 cut(s) 599, 734, 1173, 1249, 1279
HincII GTYRAC 1 cut(s) 1453
HindII GTYRAC 1 cut(s) 1453
HindIII AAGCTT 2 cut(s) 1485, 1547
HpaII CCGG 1 cut(s) 1432
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 2 cut(s) 370, 1453
Hpy188I TCNGA 6 cut(s) 82, 125, 303, 829, 1087, 1537
Hpy188III TCNNGA 7 cut(s) 65, 107, 202, 339, 790, 1180, 1419
Hpy8I GTNNAC 2 cut(s) 370, 1453
Hpy99I CGWCG 2 cut(s) 50, 1370
HpyAV CCTTC 6 cut(s) 146, 161, 199, 482, 636, 670
HpyCH4III ACNGT 4 cut(s) 253, 699, 1262, 1429
HpyCH4IV ACGT 4 cut(s) 72, 778, 1002, 1368
HpyCH4V TGCA 3 cut(s) 533, 806, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 416, 860
HpyF3I CTNAG 7 cut(s) 25, 302, 472, 497, 954, 1417, 1514
HpySE526I ACGT 4 cut(s) 72, 778, 1002, 1368
Hsp92II CATG 5 cut(s) 599, 734, 1173, 1249, 1279
Ksp22I TGATCA 2 cut(s) 67, 256
Kzo9I GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
LguI GCTCTTC 1 cut(s) 1528
LmnI GCTCC 2 cut(s) 155, 640
Lsp1109I GCAGC 4 cut(s) 721, 724, 863, 1330
LweI GCATC 5 cut(s) 301, 397, 793, 838, 1066
MaeI CTAG 3 cut(s) 935, 1050, 1397
MaeII ACGT 4 cut(s) 72, 778, 1002, 1368
MaeIII GTNAC 1 cut(s) 439
MalI GATC 8 cut(s) 69, 258, 300, 459, 578, 608, 894, 1442
MboI GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
MfeI CAATTG 1 cut(s) 1402
MflI RGATCY 4 cut(s) 298, 457, 892, 1440
MhlI GDGCHC 1 cut(s) 650
MluCI AATT 3 cut(s) 100, 1402, 1592
MlyI GAGTC 2 cut(s) 12, 940
Mph1103I ATGCAT 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 5 cut(s) 11, 384, 765, 1200, 1289
MslI CAYNNNNRTG 1 cut(s) 1274
MspA1I CMGCKG 1 cut(s) 1343
MspI CCGG 1 cut(s) 1432
MspR9I CCNGG 2 cut(s) 216, 639
MunI CAATTG 1 cut(s) 1402
Mva1269I GAATGC 2 cut(s) 533, 1367
MvaI CCWGG 2 cut(s) 216, 639
MvnI CGCG 1 cut(s) 1034
MwoI GCNNNNNNNGC 3 cut(s) 137, 416, 860
NcoI CCATGG 1 cut(s) 1169
NdeI CATATG 1 cut(s) 188
NdeII GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
NlaIII CATG 5 cut(s) 599, 734, 1173, 1249, 1279
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 1 cut(s) 439
NsiI ATGCAT 1 cut(s) 535
NspV TTCGAA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 1528
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 695
PctI GAATGC 2 cut(s) 533, 1367
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 9 cut(s) 5, 83, 321, 426, 1008, 1066, 1088, 1176, 1538
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 5 cut(s) 736, 739, 853, 1345, 1520
PleI GAGTC 2 cut(s) 12, 939
PpsI GAGTC 2 cut(s) 12, 939
Ppu21I YACGTR 1 cut(s) 1003
Psp6I CCWGG 2 cut(s) 214, 637
PspGI CCWGG 2 cut(s) 214, 637
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 1 cut(s) 1429
PsrI GAACNNNNNNTAC 2 cut(s) 1406, 1438
PsuI RGATCY 4 cut(s) 298, 457, 892, 1440
PvuII CAGCTG 1 cut(s) 1343
RsaI GTAC 4 cut(s) 60, 389, 572, 1589
RsaNI GTAC 4 cut(s) 59, 388, 571, 1588
RseI CAYNNNNRTG 1 cut(s) 1274
Rsr2I CGGWCCG 1 cut(s) 1429
RsrII CGGWCCG 1 cut(s) 1429
SapI GCTCTTC 1 cut(s) 1528
SaqAI TTAA 5 cut(s) 11, 384, 765, 1200, 1289
SatI GCNGC 5 cut(s) 735, 738, 852, 1344, 1519
Sau3AI GATC 8 cut(s) 67, 256, 298, 457, 576, 606, 892, 1440
Sau96I GGNCC 1 cut(s) 1429
ScaI AGTACT 2 cut(s) 389, 572
SchI GAGTC 2 cut(s) 12, 940
ScrFI CCNGG 2 cut(s) 216, 639
SduI GDGCHC 1 cut(s) 650
SfaNI GCATC 5 cut(s) 301, 397, 793, 838, 1066
SfcI CTRYAG 1 cut(s) 1128
SfuI TTCGAA 1 cut(s) 150
SinI GGWCC 1 cut(s) 1429
SmiMI CAYNNNNRTG 1 cut(s) 1274
Sse9I AATT 3 cut(s) 100, 1402, 1592
SsiI CCGC 2 cut(s) 242, 1518
SspI AATATT 1 cut(s) 345
SspMI CTAG 3 cut(s) 935, 1050, 1397
StyD4I CCNGG 2 cut(s) 214, 637
StyI CCWWGG 2 cut(s) 610, 1169
TaaI ACNGT 4 cut(s) 253, 699, 1262, 1429
TaiI ACGT 4 cut(s) 75, 781, 1005, 1371
TaqI TCGA 4 cut(s) 150, 605, 693, 1495
TaqII GACCGA 1 cut(s) 679
TasI AATT 3 cut(s) 100, 1402, 1592
TatI WGTACW 3 cut(s) 387, 570, 1587
TauI GCSGC 1 cut(s) 1521
TfiI GAWTC 9 cut(s) 5, 83, 321, 426, 1008, 1066, 1088, 1176, 1538
Tru1I TTAA 5 cut(s) 11, 384, 765, 1200, 1289
Tru9I TTAA 5 cut(s) 11, 384, 765, 1200, 1289
TscAI CASTG 2 cut(s) 458, 1197
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 4 cut(s) 734, 737, 851, 1343
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 6 cut(s) 308, 501, 941, 1219, 1258, 1374
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 2 cut(s) 458, 1197
VpaK11BI GGWCC 1 cut(s) 1429
XapI RAATTY 2 cut(s) 100, 1592
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 3 cut(s) 935, 1050, 1397
ZrmI AGTACT 2 cut(s) 389, 572
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.