Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Reverse (-)

12087300 .. 12090844

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G197500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGAGACTGTGCCTTATCCTGTTTTTGATAACCAGGCTATTTACAAACTCTCAATCAATTAGCAGAGCTGATTTCCCAGATGGGTTCGTTTTCGGAACGGCTTCTTCAGCATACCAGTTTGAGGGGGCTGCAAATGAAGGAAACAAGGGAGCTAGCGTATGGGATACTTTCACAAAAGAACCAGGGAGGATTTTGGACTTCAGCAATGCAGACACAGCCGTGGATCAATATCACAGATTTCAGAGTGATATAGACTTGATGAAGGATATGGGAGTGGATGCATACAGATTCTCGATATCGTGGCCCAGAATTTTTCCAAATGGAACAGGAGAACCCAACTCAGAAGGAATAAACTACTACAACAGCCTTATAGATGCTTTGCTGGAAAAAGGGATCAAGCCTTTTGTAACACTATATCACTGGGATCTTCCACAAGTGCTTGAAGACAGATATGAAGGATGGTTAAGCACACAGATCGTAAAAGACTTTGAACATTATGCCTTCACCTGCTTCCAAACTTTTGGAGATAGAGTGAAGCACTGGATCACCTTCAACGAGCCTCATAATACCGCTCTCCAAGGTTATGACTTAGGCATACAAGCTCCTGGGAGATGTTCGATTCTTGGTCATTTGTTTTGTAAGAAAGGAAATTCATCTGCAGAGCCATACATTGTTGCTCACAACATCCTTCTCTCTCATGTGGCTGCTTATCATAGTTACCGGCAATTTTTCAAGGAGAGACAAGGAGGTCAAGTAGGAATTGCACTGGATGTCAAATGGTACGAACCTGTATCTGATAATGATGAGGACATAGATGCAGCACATAGAGCAATCGACTTCTCATTAGGATGGTTCCTTGATCCACTATTTTTTGGCAAATATCCTCTTTCAATGAAGAAGCTTGTGGGTCAGAGATTACCAGAGATTTCACAGGCAATCTCAAAATTCCTGGTTGGATCCGTGGACTTTGTTGGCATAAACCACTACACCACACTATATGCTCGAAATGACAGGACTCGGATTCGAAAGTTCATAATGCAGGATGCTATATCTGATGCTGCAGTCATTATAACCCCATATAAAGAAGGAGTGGCAATCGGAGAAAGAGCAGCATCCCACTGGTTACGCATAGTCCCATGGGGCATCCGAAAGTTGGCAAGACATCTGAAAGATAAGTACCAGAACCCTCCAGTGATAATTACAGAAAATGGTATGGATGATCCAAACAAACCTTTCATACCTTTAGAAAAGGCTTTAAAGGATGAAAAGAGGATAAGATTCCACGCAGACTATCTCTCGAACCTATCTGCTGCTATAAGGCAAGACAACTGCGATGTTCGTGGTTATTTCGTGTGGTCGTTGCTCGACAACTGGGAATGGAACATGGGCTACACTGTTCGGTTTGGACTTTACTATGTGGATTACAAGAAGAACCTTACAAGGATTCCTAAAACTTCAGTCCAATGGTTTAGAAGATTTCTCCAAGTTAATGATGATCTGAGAGACTACACCAGATCTAAGAACTTACTTTTGGCTACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

515

Amino Acids

59.29

Weight (kDa)

7.23

Isoelectric Point (pI)

24.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
AarI	CACCTGC	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	747
Acc36I	ACCTGC	1 cut(s)	515
AccBSI	CCGCTC	1 cut(s)	572
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	8 cut(s)	231, 401, 432, 551, 854, 951, 964, 1214
AcsI	RAATTY	3 cut(s)	309, 649, 944
AcuI	CTGAAG	3 cut(s)	90, 184, 1440
AfaI	GTAC	2 cut(s)	782, 1178
AfiI	CCNNNNNNNGG	2 cut(s)	121, 1153
AgsI	TTSAA	5 cut(s)	443, 491, 553, 733, 891
AjnI	CCWGG	4 cut(s)	32, 181, 604, 948
AjuI	GAANNNNNNNTTGG	1 cut(s)	1514
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	4 cut(s)	68, 152, 602, 901
AluI	AGCT	4 cut(s)	68, 152, 602, 901
Alw26I	GTCTC	2 cut(s)	733, 1497
AlwI	GGATC	8 cut(s)	231, 401, 432, 551, 854, 951, 964, 1214
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	6 cut(s)	128, 704, 818, 1058, 1109, 1310
ApoI	RAATTY	3 cut(s)	309, 649, 944
Asp700I	GAANNNNTTC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	496, 538
AsuII	TTCGAA	1 cut(s)	1024
AsuNHI	GCTAGC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	956
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	115, 691, 830, 1045, 1121, 1297
BccI	CCATC	3 cut(s)	74, 453, 843
BceAI	ACGGC	2 cut(s)	114, 203
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	4 cut(s)	34, 183, 606, 950
BciVI	GTATCC	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	733, 1497
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	657, 1059
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	1514
BisI	GCNGC	6 cut(s)	129, 705, 819, 1059, 1110, 1311
BlsI	GCNGC	6 cut(s)	130, 706, 820, 1060, 1111, 1312
Bme1390I	CCNGG	4 cut(s)	34, 183, 606, 950
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	854, 958
BmrFI	CCNGG	4 cut(s)	34, 183, 606, 950
BmrI	ACTGGG	2 cut(s)	430, 1381
BmsI	GCATC	7 cut(s)	268, 364, 805, 1033, 1045, 1121, 1152
BmtI	GCTAGC	1 cut(s)	156
BmuI	ACTGGG	2 cut(s)	430, 1381
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	1173
Bpu14I	TTCGAA	1 cut(s)	1024
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	6 cut(s)	182, 219, 577, 605, 960, 1136
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 516, 546, 738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 1153
Bse118I	RCCGGY	1 cut(s)	720
Bse1I	ACTGG	7 cut(s)	115, 425, 545, 771, 1124, 1190, 1376
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	4 cut(s)	34, 183, 606, 950
BseDI	CCNNGG	6 cut(s)	182, 219, 577, 605, 960, 1136
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	121, 1153
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	354, 1490
BseNI	ACTGG	7 cut(s)	115, 425, 545, 771, 1124, 1190, 1376
BseXI	GCAGC	6 cut(s)	115, 691, 830, 1045, 1121, 1297
BshFI	GGCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	721
BslFI	GGGAC	1 cut(s)	1118
BslI	CCNNNNNNNGG	2 cut(s)	121, 1153
BsmAI	GTCTC	2 cut(s)	733, 1497
BsmFI	GGGAC	1 cut(s)	1118
BsnI	GGCC	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	1024
Bsp19I	CCATGG	1 cut(s)	1136
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	353, 1491
BspLI	GGNNCC	2 cut(s)	854, 958
BspMAI	CTGCAG	2 cut(s)	661, 1063
BspMI	ACCTGC	1 cut(s)	515
BspOI	GCTAGC	1 cut(s)	156
BspPI	GGATC	8 cut(s)	231, 401, 432, 551, 854, 951, 964, 1214
BspT104I	TTCGAA	1 cut(s)	1024
BsrBI	CCGCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	720
BsrI	ACTGG	7 cut(s)	115, 425, 545, 771, 1124, 1190, 1376
BssAI	RCCGGY	1 cut(s)	720
BssECI	CCNNGG	6 cut(s)	182, 219, 577, 605, 960, 1136
BssT1I	CCWWGG	2 cut(s)	577, 1136
Bst2UI	CCWGG	4 cut(s)	34, 183, 606, 950
Bst4CI	ACNGT	2 cut(s)	9, 1396
BstBI	TTCGAA	1 cut(s)	1024
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	4 cut(s)	340, 589, 1499, 1518
BstDSI	CCRYGG	3 cut(s)	219, 960, 1136
BstMAI	GTCTC	2 cut(s)	733, 1497
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 215, 827
BstNI	CCWGG	4 cut(s)	34, 183, 606, 950
BstSCI	CCNGG	4 cut(s)	32, 181, 604, 948
BstSFI	CTRYAG	2 cut(s)	657, 1059
BstV1I	GCAGC	6 cut(s)	115, 691, 830, 1045, 1121, 1297
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	3 cut(s)	424, 956, 1514
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	3 cut(s)	424, 956, 1514
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	304
BtgI	CCRYGG	3 cut(s)	219, 960, 1136
BtgZI	GCGATG	1 cut(s)	1347
BtsIMutI	CAGTG	6 cut(s)	418, 538, 764, 1117, 1197, 1392
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	720
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	781, 1177
CviAII	CATG	3 cut(s)	698, 1137, 1384
CviQI	GTAC	2 cut(s)	781, 1177
DdeI	CTNAG	4 cut(s)	340, 589, 1499, 1518
DraI	TTTAAA	1 cut(s)	1257
DrdI	GACNNNNNNGTC	1 cut(s)	747
DseDI	GACNNNNNNGTC	1 cut(s)	747
Eco130I	CCWWGG	2 cut(s)	577, 1136
Eco32I	GATATC	1 cut(s)	297
Eco57I	CTGAAG	3 cut(s)	90, 184, 1440
EcoRII	CCWGG	4 cut(s)	32, 181, 604, 948
EcoRV	GATATC	1 cut(s)	297
EcoT14I	CCWWGG	2 cut(s)	577, 1136
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	577, 1136
FaeI	CATG	3 cut(s)	701, 1140, 1387
FaqI	GGGAC	1 cut(s)	1118
FatI	CATG	3 cut(s)	697, 1136, 1383
Fnu4HI	GCNGC	6 cut(s)	129, 705, 819, 1059, 1110, 1311
Fsp4HI	GCNGC	6 cut(s)	129, 705, 819, 1059, 1110, 1311
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	6 cut(s)	129, 705, 819, 1059, 1110, 1311
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	721
Hin1II	CATG	3 cut(s)	701, 1140, 1387
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	6 cut(s)	288, 619, 1015, 1021, 1278, 1444
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	2 cut(s)	496, 538
Hpy166II	GTNNAC	1 cut(s)	964
Hpy188III	TCNNGA	2 cut(s)	292, 1297
Hpy8I	GTNNAC	1 cut(s)	964
HpyAV	CCTTC	8 cut(s)	131, 256, 338, 449, 511, 559, 698, 1079
HpyCH4III	ACNGT	2 cut(s)	9, 1396
HpyCH4V	TGCA	8 cut(s)	131, 209, 281, 659, 764, 818, 1039, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 215, 827
HpyF3I	CTNAG	4 cut(s)	340, 589, 1499, 1518
Hsp92II	CATG	3 cut(s)	701, 1140, 1387
LmnI	GCTCC	2 cut(s)	149, 607
Lsp1109I	GCAGC	6 cut(s)	115, 691, 830, 1045, 1121, 1297
LweI	GCATC	7 cut(s)	268, 364, 805, 1033, 1045, 1121, 1152
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	406, 716, 1122
MbiI	CCGCTC	1 cut(s)	572
MboII	GAAGA	6 cut(s)	96, 419, 455, 907, 1441, 1485
MflI	RGATCY	3 cut(s)	424, 956, 1514
MluCI	AATT	8 cut(s)	57, 309, 649, 725, 759, 944, 1197, 1540
MlyI	GAGTC	1 cut(s)	1009
MmeI	TCCRAC	1 cut(s)	934
MnlI	CCTC	8 cut(s)	115, 180, 570, 740, 799, 894, 1197, 1263
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	3 cut(s)	464, 1256, 1488
MslI	CAYNNNNRTG	2 cut(s)	218, 847
MspI	CCGG	1 cut(s)	721
MspR9I	CCNGG	4 cut(s)	34, 183, 606, 950
MvaI	CCWGG	4 cut(s)	34, 183, 606, 950
MwoI	GCNNNNNNNGC	3 cut(s)	107, 215, 827
NcoI	CCATGG	1 cut(s)	1136
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	701, 1140, 1387
NlaIV	GGNNCC	2 cut(s)	854, 958
NsiI	ATGCAT	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	1024
OliI	CACNNNNGTG	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	5 cut(s)	288, 619, 1021, 1278, 1444
PkrI	GCNGC	6 cut(s)	130, 706, 820, 1060, 1111, 1312
PleI	GAGTC	1 cut(s)	1009
PpsI	GAGTC	1 cut(s)	1009
PsiI	TTATAA	1 cut(s)	1070
Psp6I	CCWGG	4 cut(s)	32, 181, 604, 948
PspGI	CCWGG	4 cut(s)	32, 181, 604, 948
PspN4I	GGNNCC	2 cut(s)	854, 958
PspPI	GGNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	1373, 1405
PstI	CTGCAG	2 cut(s)	661, 1063
PsuI	RGATCY	3 cut(s)	424, 956, 1514
RsaI	GTAC	2 cut(s)	782, 1178
RsaNI	GTAC	2 cut(s)	781, 1177
RseI	CAYNNNNRTG	2 cut(s)	218, 847
SaqAI	TTAA	3 cut(s)	464, 1256, 1488
SatI	GCNGC	6 cut(s)	129, 705, 819, 1059, 1110, 1311
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	1009
ScrFI	CCNGG	4 cut(s)	34, 183, 606, 950
SfaNI	GCATC	7 cut(s)	268, 364, 805, 1033, 1045, 1121, 1152
SfcI	CTRYAG	2 cut(s)	657, 1059
SfuI	TTCGAA	1 cut(s)	1024
SmiMI	CAYNNNNRTG	2 cut(s)	218, 847
Sse9I	AATT	8 cut(s)	57, 309, 649, 725, 759, 944, 1197, 1540
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	4 cut(s)	32, 181, 604, 948
StyI	CCWWGG	2 cut(s)	577, 1136
TaaI	ACNGT	2 cut(s)	9, 1396
TaqI	TCGA	7 cut(s)	293, 617, 834, 1003, 1024, 1298, 1365
TasI	AATT	8 cut(s)	57, 309, 649, 725, 759, 944, 1197, 1540
TfiI	GAWTC	5 cut(s)	288, 619, 1021, 1278, 1444
Tru1I	TTAA	3 cut(s)	464, 1256, 1488
Tru9I	TTAA	3 cut(s)	464, 1256, 1488
TscAI	CASTG	6 cut(s)	425, 545, 771, 1124, 1197, 1399
TseI	GCWGC	6 cut(s)	128, 704, 818, 1058, 1109, 1310
TspDTI	ATGAA	8 cut(s)	150, 275, 468, 642, 908, 1021, 1225, 1278
TspGWI	ACGGA	1 cut(s)	949
TspRI	CASTG	6 cut(s)	425, 545, 771, 1124, 1197, 1399
XapI	RAATTY	3 cut(s)	309, 649, 944
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.