Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Reverse (-)

14629643 .. 14636891

Gene Structure 7249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21512.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAACTATGCATCATCCTGTTACTGATAACCAGGCTCTTTACAATCTCTCAATCTCTTAGCAGAGCTGATTTTCCTGAAGGGTTCGTTTTCGGAACAGCTTCTTCGGCATACCAGTTTGAGGGAGCTGTGAATGAAGGAAACAAGGGAGCTAGTGTATGGGATACTTTCACAAAAGTACCAGGGAAGATTTTAGATTTCAGCAATGCAGACACAGCTGTTGATCAATATCACAGATTTCAGGGTGATGTAGACTTGATGAAGGATATGGGAGTAAATGCGTACAGATTTTCAATATCGTGGCCACGAATTTTTCCAAATGGAACAGGAGCACCCAACTCAGAAGGAATAAGCTACTACAATAGCCTTATAGATTCTTTACTTGAAAAAGGGATCCAGCCTTTTGTAACTCTATATCATTGGGATCTTCCGCAGATGCTTGAAGACAAATATGAAGGATGGTTGAGCACACAGATAGTAAAAGACTTTGAACATTATGCCATCACCTGCTTCCAAGCTTTTGGAGATAGAGTTAAGAACTGGATCACCTTCAACGAGCCTCATGGTTATGCACTTCAAAGTTATGACTTGGGAATACAAGCTCCCGGACGATGTTCTATTCTTGGTCACTTGTTTTGTAAGAAAGGAAATTCATCTGTTGAACCATACATTGTCGCTCACAACATCCTCCTGTCCCATGCTGCTACTTATCATACATACCAGCAATATTTCAAGGAGAAACAAGGAGGTCAGATTGGAATTTCATTGGATGCCAAATGGCATGAACCTCTCTCGGAAACTGATGAGGATATAGATGCAGCACATAGAGCGAATGAGTTCAGTTTGGGATGGTTCCTTGATCCACTATTTTTTGGCGATTATCCTCTCTCAATGAAGAAGCTTGTGGGTAAGCGATTACCTGCAATTTCGAAGGAAGTTTCAAAATTCCTCGTGGGATCAGTGGACTTTATCGGCATAAACCACTACACCACATTATATGCTCGGAATGACAGGACACGAATTCGAAAATTTATATTGCAGGATGCTACATCTGATGCTGCAGTCATTACAACACATTACAAAGGAGGAGTGGCTATTGGAGAAAAAGTACGTCTCAACCACTTGATAAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

379

Amino Acids

42.66

Weight (kDa)

6.35

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	23 - 344	2e-116	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	2 cut(s)	515, 928
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	6 cut(s)	388, 401, 432, 551, 854, 964
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	6 cut(s)	309, 649, 759, 944, 1020, 1028
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	3 cut(s)	180, 284, 1110
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	9 cut(s)	294, 386, 443, 491, 553, 578, 662, 733, 942
AjnI	CCWGG	2 cut(s)	32, 181
AluBI	AGCT	9 cut(s)	68, 101, 128, 152, 218, 354, 518, 602, 901
AluI	AGCT	9 cut(s)	68, 101, 128, 152, 218, 354, 518, 602, 901
Alw21I	GWGCWC	2 cut(s)	334, 470
Alw26I	GTCTC	1 cut(s)	1118
AlwI	GGATC	6 cut(s)	388, 401, 432, 551, 854, 964
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	701, 818, 1058
ApoI	RAATTY	6 cut(s)	309, 649, 759, 944, 1020, 1028
Asp700I	GAANNNNTTC	2 cut(s)	100, 836
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	3 cut(s)	257, 496, 538
AsuII	TTCGAA	2 cut(s)	929, 1024
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BalI	TGGCCA	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	334, 470
BbvI	GCAGC	3 cut(s)	688, 830, 1045
BccI	CCATC	3 cut(s)	453, 509, 843
BciT130I	CCWGG	2 cut(s)	34, 183
BciVI	GTATCC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	1118
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	1059
BfuAI	ACCTGC	2 cut(s)	515, 928
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	3 cut(s)	702, 819, 1059
BlsI	GCNGC	3 cut(s)	703, 820, 1060
Bme1390I	CCNGG	3 cut(s)	34, 183, 606
BmiI	GGNNCC	2 cut(s)	395, 854
BmrFI	CCNGG	3 cut(s)	34, 183, 606
BmsI	GCATC	6 cut(s)	21, 426, 760, 805, 1033, 1045
BpiI	GAAGAC	1 cut(s)	450
Bpu14I	TTCGAA	2 cut(s)	929, 1024
BpuMI	CCSGG	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 516, 546, 1092, 1122
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	115, 545
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	34, 183
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	6 cut(s)	15, 464, 684, 775, 854, 1048
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	115, 545
BseRI	GAGGAG	1 cut(s)	1101
BseXI	GCAGC	3 cut(s)	688, 830, 1045
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	334, 470
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	1118
BsmBI	CGTCTC	1 cut(s)	1118
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	304
Bsp119I	TTCGAA	2 cut(s)	929, 1024
Bsp1286I	GDGCHC	2 cut(s)	334, 470
Bsp143I	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	395, 854
BspMAI	CTGCAG	1 cut(s)	1063
BspMI	ACCTGC	2 cut(s)	515, 928
BspPI	GGATC	6 cut(s)	388, 401, 432, 551, 854, 964
BspT104I	TTCGAA	2 cut(s)	929, 1024
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	115, 545
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
BssSI	CACGAG	1 cut(s)	950
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	2 cut(s)	34, 183
BstBI	TTCGAA	2 cut(s)	929, 1024
BstDEI	CTNAG	2 cut(s)	59, 340
BstF5I	GGATG	6 cut(s)	15, 464, 684, 775, 854, 1048
BstKTI	GATC	6 cut(s)	226, 396, 427, 546, 862, 959
BstMAI	GTCTC	1 cut(s)	1118
BstMBI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 215, 827
BstNI	CCWGG	2 cut(s)	34, 183
BstSCI	CCNGG	3 cut(s)	32, 181, 604
BstSFI	CTRYAG	1 cut(s)	1059
BstV1I	GCAGC	3 cut(s)	688, 830, 1045
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	393, 424
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	2 cut(s)	393, 424
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	6 cut(s)	15, 464, 684, 775, 854, 1048
BtsIMutI	CAGTG	1 cut(s)	966
BveI	ACCTGC	2 cut(s)	515, 928
Csp6I	GTAC	3 cut(s)	179, 283, 1109
CviAII	CATG	3 cut(s)	563, 698, 782
CviQI	GTAC	3 cut(s)	179, 283, 1109
DdeI	CTNAG	2 cut(s)	59, 340
DpnI	GATC	6 cut(s)	225, 395, 426, 545, 861, 958
DpnII	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
EaeI	YGGCCR	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	1020
EcoRII	CCWGG	2 cut(s)	32, 181
EcoT22I	ATGCAT	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	1118
FaeI	CATG	3 cut(s)	566, 701, 785
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	3 cut(s)	562, 697, 781
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	702, 819, 1059
FokI	GGATG	6 cut(s)	2, 471, 671, 782, 861, 1055
Fsp4HI	GCNGC	3 cut(s)	702, 819, 1059
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	3 cut(s)	702, 819, 1059
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	3 cut(s)	566, 701, 785
HindIII	AAGCTT	2 cut(s)	516, 899
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	3 cut(s)	257, 496, 538
Hpy166II	GTNNAC	2 cut(s)	253, 964
Hpy188I	TCNGA	6 cut(s)	95, 343, 753, 796, 1005, 1054
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	253, 964
HpyAV	CCTTC	7 cut(s)	74, 131, 256, 338, 449, 559, 925
HpyCH4IV	ACGT	1 cut(s)	1111
HpyCH4V	TGCA	7 cut(s)	12, 209, 572, 818, 923, 1039, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 215, 827
HpyF3I	CTNAG	2 cut(s)	59, 340
HpySE526I	ACGT	1 cut(s)	1111
Hsp92II	CATG	3 cut(s)	566, 701, 785
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
LmnI	GCTCC	4 cut(s)	125, 149, 329, 607
Lsp1109I	GCAGC	3 cut(s)	688, 830, 1045
LweI	GCATC	6 cut(s)	21, 426, 760, 805, 1033, 1045
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	1111
MaeIII	GTNAC	3 cut(s)	21, 406, 626
MalI	GATC	6 cut(s)	225, 395, 426, 545, 861, 958
MboI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
MboII	GAAGA	5 cut(s)	96, 199, 419, 455, 907
MflI	RGATCY	2 cut(s)	393, 424
MhlI	GDGCHC	2 cut(s)	334, 470
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	7 cut(s)	309, 649, 759, 924, 944, 1020, 1028
MluNI	TGGCCA	1 cut(s)	304
MnlI	CCTC	9 cut(s)	115, 570, 698, 740, 798, 799, 894, 959, 1079
Mox20I	TGGCCA	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	14
MroXI	GAANNNNTTC	2 cut(s)	100, 836
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	3 cut(s)	34, 183, 606
MvaI	CCWGG	2 cut(s)	34, 183
MwoI	GCNNNNNNNGC	3 cut(s)	107, 215, 827
NciI	CCSGG	1 cut(s)	606
NdeII	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
NlaIII	CATG	3 cut(s)	566, 701, 785
NlaIV	GGNNCC	2 cut(s)	395, 854
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	14
NspV	TTCGAA	2 cut(s)	929, 1024
PaqCI	CACCTGC	1 cut(s)	515
PdmI	GAANNNNTTC	2 cut(s)	100, 836
PfeI	GAWTC	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	703, 820, 1060
Psp6I	CCWGG	2 cut(s)	32, 181
PspGI	CCWGG	2 cut(s)	32, 181
PspN4I	GGNNCC	2 cut(s)	395, 854
PstI	CTGCAG	1 cut(s)	1063
PsuI	RGATCY	2 cut(s)	393, 424
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	3 cut(s)	180, 284, 1110
RsaNI	GTAC	3 cut(s)	179, 283, 1109
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	3 cut(s)	702, 819, 1059
Sau3AI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
ScrFI	CCNGG	3 cut(s)	34, 183, 606
SduI	GDGCHC	2 cut(s)	334, 470
SfaNI	GCATC	6 cut(s)	21, 426, 760, 805, 1033, 1045
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	2 cut(s)	929, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	567
Sse9I	AATT	7 cut(s)	309, 649, 759, 924, 944, 1020, 1028
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	728
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	32, 181, 604
TaiI	ACGT	1 cut(s)	1114
TaqI	TCGA	2 cut(s)	929, 1024
TasI	AATT	7 cut(s)	309, 649, 759, 924, 944, 1020, 1028
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	966
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	3 cut(s)	701, 818, 1058
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	8 cut(s)	17, 150, 275, 468, 642, 753, 798, 908
TspRI	CASTG	1 cut(s)	966
XapI	RAATTY	6 cut(s)	309, 649, 759, 944, 1020, 1028
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	2 cut(s)	100, 836
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.