Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Reverse (-)

32274583 .. 32278027

Gene Structure 3445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG251600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTTGAAGACAGATATGAAGGATGGTTGAGCACACAGATAGTAAAAGACTTTGAACATTATGCCTTCACCTGCTTCCAAGCGTTTGGAGACAGAGTTAAGCACTGGATCACCATCAACGAGCCTCATGGTTATGCACTCCAAAGTTATGACTTGGGAATACAAGCTCCCGGGCGATGTTCTATTCTTGGTCACTTGTTTTGTAAGAAAGGAAATTCATCCGTTGAACCATACATTGTTGCTCACAACATCCTCCTGACTCATGCTGCAACTTATCATATGTACCAGAAATTTTTCCAGGAGAAACAAGTAGGTCAGGTTGGAATTGCACTGGATGCAAAATGGCATGAACCTCTATCGGAAAGTGATGAGGACATAGATGCAGCACATAGAGCGAATGAATTCACATTGGGATGGTTCCTTGATCCACTATTTTTTGGCGACTATCCTCTCTCAATGAAGAAGCTTGTGGGTAAGCGATTACCTGAGATTTCGCAGGAAGTATCAAAATTCTTGGTGGGATCTGTGGACTTTATCGGCATAAACCACTACACCACATTATATGCTCGGAATGACAGGACACGGATTCGAAAATTTATATTGCAGGATGCTACATCTGATGCTGCAGTCATTACAACACAATACAAAGGAGGAGTGGCGATTGGAGAAAAAGCAGCTTCTCGCTGGTTACGCATAGTCCCATGGGGCATCCGAAAGTTGGCAAGATACATCAAAGATAAGTACGGGAACCCCCCAGTGATGATAACAGAAAATGGTATGGATGATCCAAATAAACCTTTCATATCTATGGAGAAGGCTTTAAATGATGAGAAGAGGATACGATTTCACAGGGACTATCTCTCAAACCTATCAGCTGCTATAAGGGAAGACAAATGTGATGTTCGTGGTTATTTTGTGTGGTCATTACTTGACAACTGGGAATGGAACATGGGCTACACTGTCAGATTTGGGCTCTACTATGTCGATTACAAGAAGAACCTTACGAGGATTCCTAAATCTTCTGTTCAATGGTTTACAAGATTTCTCCAAGTTAACAATCATCAGAGTTTTGTGCAGACACAGCACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

363

Amino Acids

42.27

Weight (kDa)

8.64

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	2 - 352	1.6e-91	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	80
AclWI	GGATC	4 cut(s)	116, 419, 529, 779
AcsI	RAATTY	5 cut(s)	214, 290, 401, 509, 593
AfaI	GTAC	2 cut(s)	284, 743
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflIII	ACRYGT	1 cut(s)	1086
AgsI	TTSAA	4 cut(s)	8, 56, 227, 1028
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	4 cut(s)	167, 466, 677, 875
AluI	AGCT	4 cut(s)	167, 466, 677, 875
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	4 cut(s)	116, 419, 529, 779
Ama87I	CYCGRG	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	266, 383, 623, 674, 875
ApoI	RAATTY	5 cut(s)	214, 290, 401, 509, 593
Asp700I	GAANNNNTTC	2 cut(s)	293, 401
AsuC2I	CCSGG	2 cut(s)	171, 172
AsuHPI	GGTGA	2 cut(s)	61, 103
AsuII	TTCGAA	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	975
BbsI	GAAGAC	2 cut(s)	15, 894
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	253, 395, 610, 686, 862
BccI	CCATC	3 cut(s)	18, 122, 408
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	831
BcnI	CCSGG	2 cut(s)	171, 172
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	831
BisI	GCNGC	5 cut(s)	267, 384, 624, 675, 876
BlsI	GCNGC	5 cut(s)	268, 385, 625, 676, 877
Bme1390I	CCNGG	3 cut(s)	171, 172, 299
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	419, 749
BmrFI	CCNGG	3 cut(s)	171, 172, 299
BmrI	ACTGGG	2 cut(s)	749, 946
BmsI	GCATC	5 cut(s)	325, 370, 598, 610, 717
BmuI	ACTGGG	2 cut(s)	749, 946
BpiI	GAAGAC	2 cut(s)	15, 894
Bpu14I	TTCGAA	1 cut(s)	589
BpuMI	CCSGG	2 cut(s)	171, 172
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	170, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse1I	ACTGG	4 cut(s)	110, 336, 755, 941
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	170, 701
BseGI	GGATG	8 cut(s)	29, 218, 249, 340, 419, 613, 708, 787
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	4 cut(s)	110, 336, 755, 941
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	5 cut(s)	253, 395, 610, 686, 862
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	683, 866
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	683, 866
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	35, 975
Bsp143I	GATC	4 cut(s)	108, 424, 521, 784
Bsp19I	CCATGG	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	419, 749
BspMAI	CTGCAG	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	4 cut(s)	116, 419, 529, 779
BspT104I	TTCGAA	1 cut(s)	589
BsrI	ACTGG	4 cut(s)	110, 336, 755, 941
BssECI	CCNNGG	2 cut(s)	170, 701
BssMI	GATC	4 cut(s)	108, 424, 521, 784
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	961
Bst6I	CTCTTC	1 cut(s)	827
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	1 cut(s)	701
BstF5I	GGATG	8 cut(s)	29, 218, 249, 340, 419, 613, 708, 787
BstKTI	GATC	4 cut(s)	111, 427, 524, 787
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	108, 424, 521, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 392, 690, 1081
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	1090
BstSCI	CCNGG	3 cut(s)	169, 170, 297
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	5 cut(s)	253, 395, 610, 686, 862
BstV2I	GAAGAC	2 cut(s)	15, 894
BstX2I	RGATCY	1 cut(s)	521
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	521
BsuI	GTATCC	1 cut(s)	831
BtgI	CCRYGG	1 cut(s)	701
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	8 cut(s)	29, 218, 249, 340, 419, 613, 708, 787
BtsIMutI	CAGTG	4 cut(s)	103, 329, 762, 957
BveI	ACCTGC	1 cut(s)	80
Cfr9I	CCCGGG	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	283, 742
CviAII	CATG	6 cut(s)	128, 263, 347, 702, 949, 1087
CviJI	RGCY	8 cut(s)	124, 167, 466, 677, 818, 875, 954, 973
CviKI_1	RGCY	8 cut(s)	124, 167, 466, 677, 818, 875, 954, 973
CviQI	GTAC	2 cut(s)	283, 742
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	110, 426, 523, 786
DpnII	GATC	4 cut(s)	108, 424, 521, 784
DraI	TTTAAA	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	827
EarI	CTCTTC	1 cut(s)	827
Eco130I	CCWWGG	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	6 cut(s)	131, 266, 350, 705, 952, 1090
FaqI	GGGAC	2 cut(s)	683, 866
FatI	CATG	6 cut(s)	127, 262, 346, 701, 948, 1086
FauNDI	CATATG	1 cut(s)	279
Fnu4HI	GCNGC	5 cut(s)	267, 384, 624, 675, 876
FokI	GGATG	8 cut(s)	36, 205, 236, 347, 426, 620, 695, 794
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	5 cut(s)	267, 384, 624, 675, 876
GluI	GCNGC	5 cut(s)	267, 384, 624, 675, 876
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	6 cut(s)	131, 266, 350, 705, 952, 1090
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	3 cut(s)	259, 586, 1009
HpaI	GTTAAC	1 cut(s)	1054
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	61, 103
Hpy166II	GTNNAC	3 cut(s)	529, 1035, 1054
Hpy188I	TCNGA	6 cut(s)	361, 570, 619, 713, 965, 1065
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	3 cut(s)	529, 1035, 1054
HpyAV	CCTTC	3 cut(s)	14, 76, 808
HpyCH4III	ACNGT	1 cut(s)	961
HpyCH4V	TGCA	8 cut(s)	137, 269, 329, 338, 383, 604, 626, 1075
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 392, 690, 1081
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	6 cut(s)	131, 266, 350, 705, 952, 1090
KspAI	GTTAAC	1 cut(s)	1054
Kzo9I	GATC	4 cut(s)	108, 424, 521, 784
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	5 cut(s)	253, 395, 610, 686, 862
LweI	GCATC	5 cut(s)	325, 370, 598, 610, 717
MaeIII	GTNAC	2 cut(s)	191, 687
MalI	GATC	4 cut(s)	110, 426, 523, 786
MboI	GATC	4 cut(s)	108, 424, 521, 784
MboII	GAAGA	6 cut(s)	20, 472, 844, 899, 1006, 1011
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	35, 975
MluCI	AATT	6 cut(s)	214, 290, 324, 401, 509, 593
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	8 cut(s)	135, 263, 363, 364, 459, 644, 828, 999
MroXI	GAANNNNTTC	2 cut(s)	293, 401
MseI	TTAA	3 cut(s)	99, 821, 1053
MslI	CAYNNNNRTG	3 cut(s)	132, 412, 806
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	3 cut(s)	171, 172, 299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	335, 392, 690, 1081
NciI	CCSGG	2 cut(s)	171, 172
NcoI	CCATGG	1 cut(s)	701
NdeI	CATATG	1 cut(s)	279
NdeII	GATC	4 cut(s)	108, 424, 521, 784
NlaIII	CATG	6 cut(s)	131, 266, 350, 705, 952, 1090
NlaIV	GGNNCC	2 cut(s)	419, 749
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	1090
NspV	TTCGAA	1 cut(s)	589
PaqCI	CACCTGC	1 cut(s)	80
PciI	ACATGT	1 cut(s)	1086
PdmI	GAANNNNTTC	2 cut(s)	293, 401
PfeI	GAWTC	2 cut(s)	586, 1009
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	5 cut(s)	268, 385, 625, 676, 877
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	1086
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	419, 749
PsrI	GAACNNNNNNTAC	2 cut(s)	938, 970
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	284, 743
RsaNI	GTAC	2 cut(s)	283, 742
RseI	CAYNNNNRTG	3 cut(s)	132, 412, 806
SaqAI	TTAA	3 cut(s)	99, 821, 1053
SatI	GCNGC	5 cut(s)	267, 384, 624, 675, 876
Sau3AI	GATC	4 cut(s)	108, 424, 521, 784
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	171, 172, 299
SduI	GDGCHC	2 cut(s)	35, 975
SfaNI	GCATC	5 cut(s)	325, 370, 598, 610, 717
SfcI	CTRYAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	589
SmaI	CCCGGG	1 cut(s)	172
SmiMI	CAYNNNNRTG	3 cut(s)	132, 412, 806
Sse9I	AATT	6 cut(s)	214, 290, 324, 401, 509, 593
StyD4I	CCNGG	3 cut(s)	169, 170, 297
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	1 cut(s)	961
TaqI	TCGA	2 cut(s)	589, 984
TasI	AATT	6 cut(s)	214, 290, 324, 401, 509, 593
TfiI	GAWTC	2 cut(s)	586, 1009
Tru1I	TTAA	3 cut(s)	99, 821, 1053
Tru9I	TTAA	3 cut(s)	99, 821, 1053
TscAI	CASTG	4 cut(s)	110, 336, 762, 964
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	5 cut(s)	266, 383, 623, 674, 875
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	6 cut(s)	33, 207, 363, 414, 473, 790
TspGWI	ACGGA	2 cut(s)	211, 598
TspMI	CCCGGG	1 cut(s)	170
TspRI	CASTG	4 cut(s)	110, 336, 762, 964
XapI	RAATTY	5 cut(s)	214, 290, 401, 509, 593
XceI	RCATGY	1 cut(s)	1090
XmaI	CCCGGG	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	293, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.