Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013351.1

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Forward (+)

9680 .. 11235

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013351.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgagactatgcatcgtcctgtttctgataaccagactctttacaaactctcaatctcttagcagggctgatttcccagaagggtttgttttcggaacagcttcttcggcataccagttcgagggagctgtaaatgaaggaaacaagggagatagtgtatgggatactttcacaaaaaaaccagggaagattttagatttcagcaatgcagacacagcggtagatcaatatcacagatttcagagtgatgtagacttgatgaaggatatgggagtaaatgcatacagattctcaatatcgtggccaagaatttttccaaatggaacaggagcacccaactcagaaggaataagctactacaacagccttatagattctttgcttgcaaaagggatccagccttttgtaactctatatcattgggatcttccgcagatgcttgaagacagatatgaaggatggttgagcacacagatagtaaaagactttgaacattatgccttcacctgcttccaagcgtttggagacagagttaagcactggatcaccatcaacgagcctcatggttatgcactccaaagttatgacttgggaatacaagctcccgggcgatgttctattcttggtcacttgttttgtaagaaaggaaattcatccgttgaaccatacattgttgctcacaacatcctcctgtctcatgctgcaacttatcatatgtaccagaaatttttcaaggtaccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

247

Amino Acids

28.1

Weight (kDa)

6.29

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
Acc65I	GGTACC	1 cut(s)	736
AccB1I	GGYRCC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	218, 431
AclWI	GGATC	4 cut(s)	388, 401, 432, 551
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	3 cut(s)	309, 649, 725
AfaI	GTAC	2 cut(s)	719, 738
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	443, 491, 662, 733
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	4 cut(s)	101, 128, 354, 602
AluI	AGCT	4 cut(s)	101, 128, 354, 602
Alw21I	GWGCWC	2 cut(s)	334, 470
Alw26I	GTCTC	2 cut(s)	519, 699
AlwI	GGATC	4 cut(s)	388, 401, 432, 551
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	3 cut(s)	309, 649, 725
Asp700I	GAANNNNTTC	2 cut(s)	100, 728
Asp718I	GGTACC	1 cut(s)	736
AsuC2I	CCSGG	2 cut(s)	606, 607
AsuHPI	GGTGA	2 cut(s)	496, 538
AvaI	CYCGRG	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	736
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	334, 470
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	2 cut(s)	453, 557
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	606, 607
BcoDI	GTCTC	2 cut(s)	519, 699
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme1390I	CCNGG	3 cut(s)	183, 606, 607
BmeT110I	CYCGRG	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	395, 738
BmrFI	CCNGG	3 cut(s)	183, 606, 607
BmsI	GCATC	2 cut(s)	21, 426
BpiI	GAAGAC	1 cut(s)	450
BpuMI	CCSGG	2 cut(s)	606, 607
BsaBI	GATNNNNATC	2 cut(s)	228, 548
BsaJI	CCNNGG	2 cut(s)	182, 605
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	115, 545
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	2 cut(s)	228, 548
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	182, 605
BseGI	GGATG	3 cut(s)	464, 653, 684
BseJI	GATNNNNATC	2 cut(s)	228, 548
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	115, 545
BseXI	GCAGC	1 cut(s)	688
BshFI	GGCC	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	334, 470
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	519, 699
BsnI	GGCC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	2 cut(s)	334, 470
Bsp143I	GATC	4 cut(s)	223, 393, 424, 543
BspACI	CCGC	2 cut(s)	218, 431
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	395, 738
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	4 cut(s)	388, 401, 432, 551
BspT107I	GGYRCC	1 cut(s)	736
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	115, 545
BssECI	CCNNGG	2 cut(s)	182, 605
BssMI	GATC	4 cut(s)	223, 393, 424, 543
Bst2UI	CCWGG	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	59, 340
BstF5I	GGATG	3 cut(s)	464, 653, 684
BstKTI	GATC	4 cut(s)	226, 396, 427, 546
BstMAI	GTCTC	2 cut(s)	519, 699
BstMBI	GATC	4 cut(s)	223, 393, 424, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 215
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	181, 604, 605
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	393, 424
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	2 cut(s)	393, 424
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	625
BtsCI	GGATG	3 cut(s)	464, 653, 684
BtsIMutI	CAGTG	1 cut(s)	538
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	384
Cfr9I	CCCGGG	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	718, 737
CviAII	CATG	2 cut(s)	563, 698
CviJI	RGCY	9 cut(s)	68, 101, 128, 304, 354, 366, 400, 559, 602
CviKI_1	RGCY	9 cut(s)	68, 101, 128, 304, 354, 366, 400, 559, 602
CviQI	GTAC	2 cut(s)	718, 737
DdeI	CTNAG	2 cut(s)	59, 340
DpnI	GATC	4 cut(s)	225, 395, 426, 545
DpnII	GATC	4 cut(s)	223, 393, 424, 543
EaeI	YGGCCR	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	2 cut(s)	14, 283
FaeI	CATG	2 cut(s)	566, 701
FatI	CATG	2 cut(s)	562, 697
FauNDI	CATATG	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	3 cut(s)	471, 640, 671
Fsp4HI	GCNGC	1 cut(s)	702
GluI	GCNGC	1 cut(s)	702
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	2 cut(s)	566, 701
HinfI	GANTC	3 cut(s)	36, 288, 374
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	496, 538
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	4 cut(s)	27, 95, 243, 343
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	6 cut(s)	74, 131, 256, 338, 449, 511
HpyCH4V	TGCA	6 cut(s)	12, 209, 281, 386, 572, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 215
HpyF3I	CTNAG	2 cut(s)	59, 340
Hsp92II	CATG	2 cut(s)	566, 701
KpnI	GGTACC	1 cut(s)	740
Kzo9I	GATC	4 cut(s)	223, 393, 424, 543
LmnI	GCTCC	3 cut(s)	125, 329, 607
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	2 cut(s)	21, 426
MaeIII	GTNAC	2 cut(s)	406, 626
MalI	GATC	4 cut(s)	225, 395, 426, 545
MboI	GATC	4 cut(s)	223, 393, 424, 543
MboII	GAAGA	4 cut(s)	96, 199, 419, 455
MflI	RGATCY	2 cut(s)	393, 424
MhlI	GDGCHC	2 cut(s)	334, 470
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	3 cut(s)	309, 649, 725
MluNI	TGGCCA	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	3 cut(s)	115, 570, 698
Mox20I	TGGCCA	1 cut(s)	304
Mph1103I	ATGCAT	2 cut(s)	14, 283
MroXI	GAANNNNTTC	2 cut(s)	100, 728
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	3 cut(s)	183, 606, 607
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	107, 215
NciI	CCSGG	2 cut(s)	606, 607
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	4 cut(s)	223, 393, 424, 543
NlaIII	CATG	2 cut(s)	566, 701
NlaIV	GGNNCC	2 cut(s)	395, 738
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	2 cut(s)	14, 283
PaqCI	CACCTGC	1 cut(s)	515
PdmI	GAANNNNTTC	2 cut(s)	100, 728
PfeI	GAWTC	2 cut(s)	288, 374
PkrI	GCNGC	1 cut(s)	703
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	395, 738
PsuI	RGATCY	2 cut(s)	393, 424
RsaI	GTAC	2 cut(s)	719, 738
RsaNI	GTAC	2 cut(s)	718, 737
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	4 cut(s)	223, 393, 424, 543
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	183, 606, 607
SduI	GDGCHC	2 cut(s)	334, 470
SetI	ASST	6 cut(s)	103, 130, 356, 509, 604, 738
SfaNI	GCATC	2 cut(s)	21, 426
SmaI	CCCGGG	1 cut(s)	607
SmiMI	CAYNNNNRTG	1 cut(s)	567
Sse9I	AATT	3 cut(s)	309, 649, 725
SsiI	CCGC	2 cut(s)	218, 431
StyD4I	CCNGG	3 cut(s)	181, 604, 605
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	309, 649, 725
TfiI	GAWTC	2 cut(s)	288, 374
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	545
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	4 cut(s)	150, 275, 468, 642
TspGWI	ACGGA	1 cut(s)	646
TspMI	CCCGGG	1 cut(s)	605
TspRI	CASTG	1 cut(s)	545
XapI	RAATTY	3 cut(s)	309, 649, 725
XmaI	CCCGGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	2 cut(s)	100, 728
Zsp2I	ATGCAT	2 cut(s)	14, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.