Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Reverse (-)

31413077 .. 31415214

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAGACTATGCATCGTCCTGTTTCTGATGACCAGACTCTTTACAAACTCTCAATCTCTTAGCAGGGCTGATTTCCCAGAAGGGTTTGTTTTCGGAACAGCTTCTTCGGCATACCAGTTCGAGGGAGCTGTAAATGAAGGAAACAAGGGAGATAGTGTATGGGATACTTTCACAAAAAAACCAGGGAAGATTTTAGATTTCAGCAATGCAGACACAGCGGTAGATCAATATCACAGATTTCAGAGTGATGTAGACTTGATGAAGGATATGGGAGTAAATGCATACAGATTCTCAATATCGTGGCCAAGAATTTTTCCAAATGGAACAGGAGCACCCAACTCAGAAGGAATAAGCTACTACAACAGCCTTATAGATTCTTTGCTTGCAAAAGGGATCCAGCCTTTTGTAACTCTATATCATTGGGATCTTCCGCAGATGCTTGAAGACAGATATGAAGGATGGTTGAGCTCACAGATAGTAAAAGACTTTGAACATTATGCCTTCACCTGCTTCCAAGCGTTTGGAGACAGAGTTAAGCACTGGATCACCATCAACGAGCCTCATGGTTATGCACTCCAAAGTTATGACTTGGGAATACAAGCTCCCGGGCGATGTTCTATTCTTGGTCACTTGTTTTGTAAGAAAGGAAATTCATCCGTTGAACCATACATTGTTGCTCACAACATCCTCCTGTCTCATGCTGCAACTTATCATATGTACCAGAAATTTTTCAAGGAGAAACAAGTAGGTCAGGTTGGAATTGCACTGGATGCAAAATGGCATGAACCTCTATCGGAAAGTGATGAGGACATAGATGCAGCACATAGAGCGAATGAATTCACATTGGGATGGTTCCTTGATCCACTATTTTTTGGCGACTATCCTCTCTCAATGAAGAAGCTTGTGGGTAAGCGATTACCTGAGATTTCGCAGGAAGAATCAAAATTCTTGGTGGGATCTGTGGACTTTATCGGCATAAACCACTACACCACATTATATGCTCGGAATGACAGGACACGGATTCGAAAATTTATATTGCAGGATGCTACATCTGATGCTGCAGTCATTACAACACGTAAGATACCACAGAACAATCTTCTGCCACTTGGTAGTGTTTGGCTGCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

376

Amino Acids

42.78

Weight (kDa)

5.95

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	23 - 345	1e-116	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	218, 431
AclWI	GGATC	6 cut(s)	388, 401, 432, 551, 854, 964
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	6 cut(s)	309, 649, 725, 836, 944, 1028
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	1073
AgsI	TTSAA	4 cut(s)	443, 491, 662, 733
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	6 cut(s)	101, 128, 354, 468, 602, 901
AluI	AGCT	6 cut(s)	101, 128, 354, 468, 602, 901
Alw21I	GWGCWC	2 cut(s)	334, 470
Alw26I	GTCTC	2 cut(s)	519, 699
AlwI	GGATC	6 cut(s)	388, 401, 432, 551, 854, 964
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	701, 818, 1058, 1120
ApoI	RAATTY	6 cut(s)	309, 649, 725, 836, 944, 1028
Asp700I	GAANNNNTTC	3 cut(s)	100, 728, 836
AsuC2I	CCSGG	2 cut(s)	606, 607
AsuHPI	GGTGA	2 cut(s)	496, 538
AsuII	TTCGAA	1 cut(s)	1024
AvaI	CYCGRG	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	334, 470
BbvI	GCAGC	4 cut(s)	688, 830, 1045, 1107
BccI	CCATC	3 cut(s)	453, 557, 843
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	606, 607
BcoDI	GTCTC	2 cut(s)	519, 699
BfmI	CTRYAG	1 cut(s)	1059
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	702, 819, 1059, 1121
BlsI	GCNGC	4 cut(s)	703, 820, 1060, 1122
Bme1390I	CCNGG	3 cut(s)	183, 606, 607
BmeT110I	CYCGRG	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	395, 854
BmrFI	CCNGG	3 cut(s)	183, 606, 607
BmsI	GCATC	6 cut(s)	21, 426, 760, 805, 1033, 1045
BpiI	GAAGAC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	1024
BpuMI	CCSGG	2 cut(s)	606, 607
BsaAI	YACGTR	1 cut(s)	1076
BsaBI	GATNNNNATC	2 cut(s)	228, 548
BsaJI	CCNNGG	2 cut(s)	182, 605
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	115, 545, 771
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	2 cut(s)	228, 548
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	182, 605
BseGI	GGATG	6 cut(s)	464, 653, 684, 775, 854, 1048
BseJI	GATNNNNATC	2 cut(s)	228, 548
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	354, 912
BseNI	ACTGG	3 cut(s)	115, 545, 771
BseXI	GCAGC	4 cut(s)	688, 830, 1045, 1107
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	334, 470
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	519, 699
BsnI	GGCC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	1024
Bsp1286I	GDGCHC	2 cut(s)	334, 470
Bsp143I	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
BspACI	CCGC	2 cut(s)	218, 431
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	353, 913
BspLI	GGNNCC	2 cut(s)	395, 854
BspMAI	CTGCAG	1 cut(s)	1063
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	6 cut(s)	388, 401, 432, 551, 854, 964
BspT104I	TTCGAA	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	115, 545, 771
BssECI	CCNNGG	2 cut(s)	182, 605
BssMI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
Bst2UI	CCWGG	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	1076
BstBI	TTCGAA	1 cut(s)	1024
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	59, 340, 921
BstF5I	GGATG	6 cut(s)	464, 653, 684, 775, 854, 1048
BstKTI	GATC	6 cut(s)	226, 396, 427, 546, 862, 959
BstMAI	GTCTC	2 cut(s)	519, 699
BstMBI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 215, 770, 827
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	181, 604, 605
BstSFI	CTRYAG	1 cut(s)	1059
BstV1I	GCAGC	4 cut(s)	688, 830, 1045, 1107
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	3 cut(s)	393, 424, 956
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	3 cut(s)	393, 424, 956
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	625
BtsCI	GGATG	6 cut(s)	464, 653, 684, 775, 854, 1048
BtsIMutI	CAGTG	2 cut(s)	538, 764
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	384
Cfr9I	CCCGGG	1 cut(s)	605
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	3 cut(s)	563, 698, 782
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	3 cut(s)	59, 340, 921
DpnI	GATC	6 cut(s)	225, 395, 426, 545, 861, 958
DpnII	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
EaeI	YGGCCR	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	2 cut(s)	14, 283
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	3 cut(s)	566, 701, 785
FatI	CATG	3 cut(s)	562, 697, 781
FauNDI	CATATG	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	702, 819, 1059, 1121
FokI	GGATG	6 cut(s)	471, 640, 671, 782, 861, 1055
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	4 cut(s)	702, 819, 1059, 1121
GluI	GCNGC	4 cut(s)	702, 819, 1059, 1121
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	3 cut(s)	566, 701, 785
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	5 cut(s)	36, 288, 374, 938, 1021
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	496, 538
Hpy166II	GTNNAC	2 cut(s)	253, 964
Hpy188I	TCNGA	7 cut(s)	27, 95, 243, 343, 796, 1005, 1054
Hpy8I	GTNNAC	2 cut(s)	253, 964
HpyAV	CCTTC	6 cut(s)	74, 131, 256, 338, 449, 511
HpyCH4IV	ACGT	1 cut(s)	1075
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 215, 770, 827
HpyF3I	CTNAG	3 cut(s)	59, 340, 921
HpySE526I	ACGT	1 cut(s)	1075
Hsp92II	CATG	3 cut(s)	566, 701, 785
Kzo9I	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
LmnI	GCTCC	3 cut(s)	125, 329, 607
Lsp1109I	GCAGC	4 cut(s)	688, 830, 1045, 1107
LweI	GCATC	6 cut(s)	21, 426, 760, 805, 1033, 1045
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	2 cut(s)	406, 626
MalI	GATC	6 cut(s)	225, 395, 426, 545, 861, 958
MboI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
MboII	GAAGA	7 cut(s)	96, 199, 419, 455, 907, 947, 1088
MflI	RGATCY	3 cut(s)	393, 424, 956
MhlI	GDGCHC	2 cut(s)	334, 470
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	7 cut(s)	309, 649, 725, 759, 836, 944, 1028
MluNI	TGGCCA	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	6 cut(s)	115, 570, 698, 798, 799, 894
Mox20I	TGGCCA	1 cut(s)	304
Mph1103I	ATGCAT	2 cut(s)	14, 283
MroXI	GAANNNNTTC	3 cut(s)	100, 728, 836
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	2 cut(s)	567, 847
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	3 cut(s)	183, 606, 607
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	107, 215, 770, 827
NciI	CCSGG	2 cut(s)	606, 607
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
NlaIII	CATG	3 cut(s)	566, 701, 785
NlaIV	GGNNCC	2 cut(s)	395, 854
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	2 cut(s)	14, 283
NspV	TTCGAA	1 cut(s)	1024
PaqCI	CACCTGC	1 cut(s)	515
PdmI	GAANNNNTTC	3 cut(s)	100, 728, 836
PfeI	GAWTC	4 cut(s)	288, 374, 938, 1021
PkrI	GCNGC	4 cut(s)	703, 820, 1060, 1122
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	1076
Psp124BI	GAGCTC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	395, 854
PstI	CTGCAG	1 cut(s)	1063
PsuI	RGATCY	3 cut(s)	393, 424, 956
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	2 cut(s)	567, 847
SacI	GAGCTC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	4 cut(s)	702, 819, 1059, 1121
Sau3AI	GATC	6 cut(s)	223, 393, 424, 543, 859, 956
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	183, 606, 607
SduI	GDGCHC	2 cut(s)	334, 470
SfaNI	GCATC	6 cut(s)	21, 426, 760, 805, 1033, 1045
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	1024
SmaI	CCCGGG	1 cut(s)	607
SmiMI	CAYNNNNRTG	2 cut(s)	567, 847
Sse9I	AATT	7 cut(s)	309, 649, 725, 759, 836, 944, 1028
SsiI	CCGC	2 cut(s)	218, 431
SstI	GAGCTC	1 cut(s)	470
StyD4I	CCNGG	3 cut(s)	181, 604, 605
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	2 cut(s)	120, 1024
TasI	AATT	7 cut(s)	309, 649, 725, 759, 836, 944, 1028
TfiI	GAWTC	4 cut(s)	288, 374, 938, 1021
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	545, 771
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	4 cut(s)	701, 818, 1058, 1120
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	7 cut(s)	150, 275, 468, 642, 798, 849, 908
TspGWI	ACGGA	2 cut(s)	646, 1033
TspMI	CCCGGG	1 cut(s)	605
TspRI	CASTG	2 cut(s)	545, 771
XapI	RAATTY	6 cut(s)	309, 649, 725, 836, 944, 1028
XmaI	CCCGGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	3 cut(s)	100, 728, 836
Zsp2I	ATGCAT	2 cut(s)	14, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.