Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347255.1

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 923

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 428 bp

atgaagaagcttgtgggtaagcgattacctgagatttcgcaggaagaatcaaaattcttggtgggatctgtggactttatcggcataaaccactacaccacattatatgctcggaatgacaggacacggattcgaaaatttatattgcaggatgctacatctgatgctgcagtcattacaacacaatacaaaggaggagtggcgattggagaaaaagcagcttctcgctggttacgcatagtcccatggggcatccgaaagttggcaagatacatcaaagataagtacgggaaccccccagtgatgataacagaaaatggtatggatgatccaaataaacctttcatatctatggagaaggctttaaatgatgagaagaggatacgatttcacagggactatctctcaaacctatcagctgctataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

9.85

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	73, 323
AcsI	RAATTY	2 cut(s)	53, 137
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	10, 221, 419
AluI	AGCT	3 cut(s)	10, 221, 419
AlwI	GGATC	2 cut(s)	73, 323
ApeKI	GCWGC	3 cut(s)	167, 218, 419
ApoI	RAATTY	2 cut(s)	53, 137
AsuII	TTCGAA	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	154, 230, 406
BciVI	GTATCC	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	168, 219, 420
BlsI	GCNGC	3 cut(s)	169, 220, 421
BmiI	GGNNCC	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	3 cut(s)	142, 154, 261
BmuI	ACTGGG	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	3 cut(s)	157, 252, 331
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	154, 230, 406
BslFI	GGGAC	2 cut(s)	227, 410
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	227, 410
Bsp119I	TTCGAA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	65, 328
Bsp19I	CCATGG	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	2 cut(s)	73, 323
BspT104I	TTCGAA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	65, 328
BssT1I	CCWWGG	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	157, 252, 331
BstKTI	GATC	2 cut(s)	68, 331
BstMBI	GATC	2 cut(s)	65, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	154, 230, 406
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	157, 252, 331
BtsIMutI	CAGTG	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	4 cut(s)	10, 221, 362, 419
CviKI_1	RGCY	4 cut(s)	10, 221, 362, 419
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	67, 330
DpnII	GATC	2 cut(s)	65, 328
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	1 cut(s)	249
FaqI	GGGAC	2 cut(s)	227, 410
FatI	CATG	1 cut(s)	245
Fnu4HI	GCNGC	3 cut(s)	168, 219, 420
FokI	GGATG	3 cut(s)	164, 239, 338
Fsp4HI	GCNGC	3 cut(s)	168, 219, 420
GluI	GCNGC	3 cut(s)	168, 219, 420
Hin1II	CATG	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	47, 130
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	114, 163, 257
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	148, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	65, 328
LpnPI	CCDG	7 cut(s)	26, 42, 106, 134, 214, 312, 379
Lsp1109I	GCAGC	3 cut(s)	154, 230, 406
LweI	GCATC	3 cut(s)	142, 154, 261
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	67, 330
MboI	GATC	2 cut(s)	65, 328
MboII	GAAGA	3 cut(s)	16, 56, 388
MflI	RGATCY	1 cut(s)	65
MluCI	AATT	2 cut(s)	53, 137
MnlI	CCTC	2 cut(s)	188, 372
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	65, 328
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	47, 130
PkrI	GCNGC	3 cut(s)	169, 220, 421
PspN4I	GGNNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	3 cut(s)	168, 219, 420
Sau3AI	GATC	2 cut(s)	65, 328
SetI	ASST	6 cut(s)	12, 31, 223, 343, 414, 421
SfaNI	GCATC	3 cut(s)	142, 154, 261
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	53, 137
StyI	CCWWGG	1 cut(s)	245
TaqI	TCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	53, 137
TfiI	GAWTC	2 cut(s)	47, 130
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	3 cut(s)	167, 218, 419
TspDTI	ATGAA	2 cut(s)	17, 334
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	306
XapI	RAATTY	2 cut(s)	53, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.