Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009301.1

Orthogroup ID

OG0008270

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 348

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009301.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

gatgagaagaggatacgatttcacagggactatctctcaaacctatcagctgctataagggaagacaaatgtgatgttcgtggttattttgtgtggtcattacttgacaactgggaatggaacatgggctacactgtcagatttgggctctactatgtcgattacaagcagaaccttacgaggattcctaaatcttctgttcaatggtttacaagatttctccaagttaacaatcatcagggttttgtgcagacacagcacatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008152 GO:0008422 GO:0009505 GO:0015926 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071704 GO:0071944 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

88

Amino Acids

10.83

Weight (kDa)

9.21

Isoelectric Point (pI)

17.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54570 AT5G54570 AT5G54570
fragaria_vesca	FvH4_3g21512 FvH4_3g21512 FvH4_3g21512 FvH4_3g21512
malus_domestica	MD03G1215300.v1.1
prunus_persica	Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1 Prupe.4G197500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036981
rosa_laevigata	RLG00000033740
rosa_multiflora	Rmu_co8347255.1_g000001 Rmu_sc0009301.1_g000001 Rmu_sc0013351.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044000
rosa_rugosa	Rorug05G0159500
rosa_samantha	Rh5AG251600 Rh5BG253100 Rh5DG261700
rosa_wichuraiana	Rw5G023170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	37
BciVI	GTATCC	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	6
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	2
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	132
CviAII	CATG	2 cut(s)	124, 262
CviJI	RGCY	3 cut(s)	50, 129, 148
CviKI_1	RGCY	3 cut(s)	50, 129, 148
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco24I	GRGCYC	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	2 cut(s)	127, 265
FaiI	YATR	4 cut(s)	56, 125, 156, 263
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	2 cut(s)	123, 261
Fnu4HI	GCNGC	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	127, 265
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	184
HpaI	GTTAAC	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	210, 229
Hpy188I	TCNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	210, 229
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	127, 265
KspAI	GTTAAC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	10, 97, 224
Lsp1109I	GCAGC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	19, 74, 186
MhlI	GDGCHC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	3, 174
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	127, 265
NspI	RCATGY	1 cut(s)	265
PciI	ACATGT	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	52
PscI	ACATGT	1 cut(s)	261
PsrI	GAACNNNNNNTAC	2 cut(s)	113, 145
PvuII	CAGCTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	3 cut(s)	45, 52, 177
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.