AT5G54585

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016103
Physical Location & Seq
Forward (+)
22175461 .. 22176735
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54585.1

Sequence Viewer

Length: 399 bp
ATGAAATTCTTGTTGGAACTCGTCGTGCCTTGTTTTGGTTCACAACAGTTCCAAGAATCCGCCGCAAGTACTGCGGATGATTCGGTTTCTGACGAAACACAAACGCTGATGAAACAACGGAGGCGACGGAAACGCGTTAGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCTCTTAGCGTTATCTCCGAGAACAAGCCGGCGATAACGAAGATATCAGAAAAGAACGAAGAAAAGAAGAAAGTCCGTCGGAAAAGTGAAGGCAACGGCGGCGGAGACGCATCATCACGGTCCGGTGGTGGTCATATTCGTTTCCGTAGTGACGATTTCGGGAGAAATGCTTTCGAACCGGTGATTCCGGCATTCTCGCCGACTCCGTTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.69

Weight (kDa)

9.99

Isoelectric Point (pI)

73.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AciI CCGC 5 cut(s) 60, 63, 74, 279, 282
AcsI RAATTY 1 cut(s) 5
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 133
AgeI ACCGGT 1 cut(s) 358
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 1 cut(s) 28
Alw26I GTCTC 3 cut(s) 169, 186, 279
ApoI RAATTY 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 3 cut(s) 169, 186, 279
BisI GCNGC 2 cut(s) 63, 280
BlsI GCNGC 2 cut(s) 64, 281
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 166, 198
Bpu14I TTCGAA 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 169
BsaWI WCCGGW 2 cut(s) 302, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 2 cut(s) 208, 358
BseBI CCWGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 358
BsiSI CCGG 4 cut(s) 209, 303, 359, 368
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 3 cut(s) 169, 186, 279
BsmBI CGTCTC 2 cut(s) 186, 279
BsmI GAATGC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 169
Bsp119I TTCGAA 1 cut(s) 354
BspACI CCGC 5 cut(s) 60, 63, 74, 279, 282
BspFNI CGCG 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 169
BsrFI RCCGGY 2 cut(s) 208, 358
BssAI RCCGGY 2 cut(s) 208, 358
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 48, 180, 300
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 135
BstMAI GTCTC 3 cut(s) 169, 186, 279
BstMWI GCNNNNNNNGC 2 cut(s) 71, 279
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 210
Cfr10I RCCGGY 2 cut(s) 208, 358
Cfr13I GGNCC 1 cut(s) 300
CpoI CGGWCCG 1 cut(s) 300
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 69
CspAI ACCGGT 1 cut(s) 358
CspI CGGWCCG 1 cut(s) 300
CviAII CATG 1 cut(s) 391
CviJI RGCY 2 cut(s) 146, 208
CviKI_1 RGCY 2 cut(s) 146, 208
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 185
EciI GGCGGA 2 cut(s) 49, 297
Eco31I GGTCTC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 225
Esp3I CGTCTC 2 cut(s) 186, 279
FaeI CATG 1 cut(s) 394
FaiI YATR 2 cut(s) 315, 392
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 63, 280
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 63, 280
GluI GCNGC 2 cut(s) 63, 280
HapII CCGG 4 cut(s) 209, 303, 359, 368
HgaI GACGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 394
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 4 cut(s) 56, 80, 364, 382
HpaII CCGG 4 cut(s) 209, 303, 359, 368
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 41, 152
Hpy188I TCNGA 4 cut(s) 91, 199, 229, 261
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 2 cut(s) 41, 152
Hpy99I CGWCG 3 cut(s) 26, 129, 261
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 3 cut(s) 48, 180, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 279
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 394
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
LpnPI CCDG 7 cut(s) 132, 141, 168, 222, 316, 372, 381
LweI GCATC 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 329
MboII GAAGA 3 cut(s) 232, 251, 259
MluCI AATT 1 cut(s) 5
MluI ACGCGT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 208
MspI CCGG 4 cut(s) 209, 303, 359, 368
MspR9I CCNGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 71, 279
NaeI GCCGGC 1 cut(s) 210
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 329
NspV TTCGAA 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PctI GAATGC 1 cut(s) 371
PdiI GCCGGC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 56, 80, 364
PinAI ACCGGT 1 cut(s) 358
PkrI GCNGC 2 cut(s) 64, 281
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspPI GGNCC 1 cut(s) 300
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
Rsr2I CGGWCCG 1 cut(s) 300
RsrII CGGWCCG 1 cut(s) 300
SatI GCNGC 2 cut(s) 63, 280
Sau96I GGNCC 1 cut(s) 300
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 156
SetI ASST 1 cut(s) 157
SfaNI GCATC 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 300
Sse9I AATT 1 cut(s) 5
SsiI CCGC 5 cut(s) 60, 63, 74, 279, 282
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 3 cut(s) 48, 180, 300
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 68
TauI GCSGC 2 cut(s) 65, 282
TfiI GAWTC 3 cut(s) 56, 80, 364
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 17, 125, 379
TspGWI ACGGA 5 cut(s) 133, 142, 245, 314, 375
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.