Rroxscaffold_1G00043960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016103
Physical Location & Seq
Reverse (-)
62697438 .. 62698347
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043960.1

Sequence Viewer

Length: 654 bp
ATGTCACCTTCCGCGCCCGGAAAGAAGATATCCCCCTCACGCGGAGGAGTGTCATCTTCTTCTCCTGCACGCGGAAACGCGCGGGGGAAAGTGTCAACTTCATCCCCCTCGCGCGGAGGGATGTCTTCTACATCTCCCCGGCGGCGGGGGCCAGCAGGGCGAGGATTTTCGAATCCGCGCGTTGTTGCTGTTAGACAGACGAGGTCGGAACTTGGGTTGGCACCGACAGCACAGCGGGTGCCGCGGCGGAAGAGCGGGAGGCCCGTAGGGTCGGCTGCTTCGGCCTTGCCTTATGCCGAGTGGACGCCGTCACTGTGCACGATCGCCGAGGACAACGTCGTTGTCGTGAGGAGATCCGTTGGGGATCGGACGCCCAGCATTGAGCGAGCGGTTAACGGAAAGAGTGGTAGAGAAATGTCGCGAGTTCAAAGCCGCAGCCACACCGATGATTACGGGTACGCGAGCTTCAGTCACAGTTATTCCGGCGTTTACTCCAACACCGTTCTTGTTTTGAAGGGAATGGACTTTTTGGCTATTTTTCAATCGTTCAATTATGGTGCGAGGGATAGGAAATTACTTGTATTGACATTCAGTGATATTGGTGCTCTAAATCGGGTTCGGGTCGAAACTGTGAATACGAAGGAAGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.17

Weight (kDa)

11.34

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 220, 238
AccBSI CCGCTC 2 cut(s) 255, 389
AclWI GGATC 2 cut(s) 348, 372
AcuI CTGAAG 1 cut(s) 451
AcyI GRCGYC 2 cut(s) 305, 371
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
AgsI TTSAA 4 cut(s) 428, 514, 542, 550
AluBI AGCT 1 cut(s) 465
AluI AGCT 1 cut(s) 465
Alw21I GWGCWC 2 cut(s) 320, 607
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 2 cut(s) 348, 372
AoxI GGCC 3 cut(s) 149, 260, 282
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 275, 435
AspLEI GCGC 4 cut(s) 16, 82, 114, 180
AspS9I GGNCC 2 cut(s) 149, 261
AsuC2I CCSGG 2 cut(s) 18, 139
AsuII TTCGAA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 2 cut(s) 220, 238
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 320, 607
BbvI GCAGC 2 cut(s) 262, 447
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 2 cut(s) 18, 139
BglI GCCNNNNNGGC 1 cut(s) 157
BisI GCNGC 6 cut(s) 143, 242, 245, 276, 433, 436
BlsI GCNGC 6 cut(s) 144, 243, 246, 277, 434, 437
Bme1390I CCNGG 2 cut(s) 18, 139
BmgT120I GGNCC 2 cut(s) 149, 261
BmiI GGNNCC 3 cut(s) 150, 222, 240
BmrFI CCNGG 2 cut(s) 18, 139
BpiI GAAGAC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 18, 139
BsaHI GRCGYC 2 cut(s) 305, 371
BsaJI CCNNGG 3 cut(s) 137, 242, 327
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
BseDI CCNNGG 3 cut(s) 137, 242, 327
BseGI GGATG 2 cut(s) 101, 126
BseLI CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
BseRI GAGGAG 2 cut(s) 60, 364
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 262, 447
BseYI CCCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 151, 262, 284
BshNI GGYRCC 2 cut(s) 220, 238
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 320, 607
BsiSI CCGG 3 cut(s) 18, 139, 483
BslI CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
BsnI GGCC 3 cut(s) 151, 262, 284
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 320, 607
Bsp143I GATC 3 cut(s) 321, 353, 364
Bsp68I TCGCGA 1 cut(s) 421
BspANI GGCC 3 cut(s) 151, 262, 284
BspLI GGNNCC 3 cut(s) 150, 222, 240
BspPI GGATC 2 cut(s) 348, 372
BspQI GCTCTTC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 2 cut(s) 220, 238
BsrBI CCGCTC 2 cut(s) 255, 389
BssECI CCNNGG 3 cut(s) 137, 242, 327
BssMI GATC 3 cut(s) 321, 353, 364
BssNI GRCGYC 2 cut(s) 305, 371
Bst4CI ACNGT 4 cut(s) 315, 476, 502, 631
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 2 cut(s) 305, 371
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 4 cut(s) 70, 153, 387, 463
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 101, 126
BstHHI GCGC 4 cut(s) 16, 82, 114, 180
BstKTI GATC 3 cut(s) 324, 356, 367
BstMBI GATC 3 cut(s) 321, 353, 364
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 5 cut(s) 148, 157, 227, 241, 281
BstSCI CCNGG 2 cut(s) 16, 137
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 262, 447
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 3 cut(s) 151, 262, 284
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 2 cut(s) 101, 126
BtsIMutI CAGTG 2 cut(s) 311, 598
BtuMI TCGCGA 1 cut(s) 421
Cac8I GCNNGC 4 cut(s) 70, 153, 387, 463
CfoI GCGC 4 cut(s) 16, 82, 114, 180
Cfr13I GGNCC 2 cut(s) 149, 261
Cfr42I CCGCGG 1 cut(s) 245
CseI GACGC 2 cut(s) 313, 379
Csp6I GTAC 1 cut(s) 457
CviJI RGCY 8 cut(s) 151, 262, 275, 284, 432, 438, 465, 533
CviKI_1 RGCY 8 cut(s) 151, 262, 275, 284, 432, 438, 465, 533
CviQI GTAC 1 cut(s) 457
DpnI GATC 3 cut(s) 323, 355, 366
DpnII GATC 3 cut(s) 321, 353, 364
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 262
Eco32I GATATC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 451
EcoRV GATATC 1 cut(s) 30
FaiI YATR 2 cut(s) 294, 555
FauI CCCGC 4 cut(s) 75, 138, 228, 248
Fnu4HI GCNGC 6 cut(s) 143, 242, 245, 276, 433, 436
FokI GGATG 2 cut(s) 88, 133
Fsp4HI GCNGC 6 cut(s) 143, 242, 245, 276, 433, 436
GlaI GCGC 4 cut(s) 15, 81, 113, 179
GluI GCNGC 6 cut(s) 143, 242, 245, 276, 433, 436
GsaI CCCAGC 1 cut(s) 378
HaeIII GGCC 3 cut(s) 151, 262, 284
HapII CCGG 3 cut(s) 18, 139, 483
HgaI GACGC 2 cut(s) 313, 379
HhaI GCGC 4 cut(s) 16, 82, 114, 180
Hin1I GRCGYC 2 cut(s) 305, 371
Hin6I GCGC 4 cut(s) 14, 80, 112, 178
HinP1I GCGC 4 cut(s) 14, 80, 112, 178
HincII GTYRAC 2 cut(s) 96, 394
HindII GTYRAC 2 cut(s) 96, 394
HinfI GANTC 1 cut(s) 172
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 3 cut(s) 18, 139, 483
Hpy166II GTNNAC 5 cut(s) 96, 303, 318, 394, 490
Hpy188I TCNGA 2 cut(s) 208, 369
Hpy188III TCNNGA 2 cut(s) 346, 420
Hpy8I GTNNAC 5 cut(s) 96, 303, 318, 394, 490
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 4 cut(s) 18, 508, 634, 638
HpyCH4III ACNGT 4 cut(s) 315, 476, 502, 631
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 68, 318
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 157, 227, 241, 281
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 2 cut(s) 305, 371
HspAI GCGC 4 cut(s) 14, 80, 112, 178
KspAI GTTAAC 1 cut(s) 394
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 3 cut(s) 321, 353, 364
LguI GCTCTTC 1 cut(s) 245
LpnPI CCDG 7 cut(s) 31, 78, 141, 152, 165, 388, 496
Lsp1109I GCAGC 2 cut(s) 262, 447
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 3, 309, 470
MalI GATC 3 cut(s) 323, 355, 366
MbiI CCGCTC 2 cut(s) 255, 389
MboI GATC 3 cut(s) 321, 353, 364
MboII GAAGA 5 cut(s) 37, 48, 51, 117, 262
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 320, 607
MluCI AATT 2 cut(s) 550, 572
MmeI TCCRAC 2 cut(s) 186, 519
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 235, 244
MspI CCGG 3 cut(s) 18, 139, 483
MspR9I CCNGG 2 cut(s) 18, 139
MwoI GCNNNNNNNGC 5 cut(s) 148, 157, 227, 241, 281
NciI CCSGG 2 cut(s) 18, 139
NdeII GATC 3 cut(s) 321, 353, 364
NlaIV GGNNCC 3 cut(s) 150, 222, 240
NmeAIII GCCGAG 2 cut(s) 322, 352
NmuCI GTSAC 3 cut(s) 3, 309, 470
NruI TCGCGA 1 cut(s) 421
NspV TTCGAA 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 1 cut(s) 172
PflFI GACNNNGTC 3 cut(s) 202, 307, 335
PkrI GCNGC 6 cut(s) 144, 243, 246, 277, 434, 437
Ple19I CGATCG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 374
PspN4I GGNNCC 3 cut(s) 150, 222, 240
PspPI GGNCC 2 cut(s) 149, 261
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 3 cut(s) 202, 307, 335
PvuI CGATCG 1 cut(s) 324
RruI TCGCGA 1 cut(s) 421
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 444
SacII CCGCGG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 6 cut(s) 143, 242, 245, 276, 433, 436
Sau3AI GATC 3 cut(s) 321, 353, 364
Sau96I GGNCC 2 cut(s) 149, 261
ScrFI CCNGG 2 cut(s) 18, 139
SduI GDGCHC 2 cut(s) 320, 607
SetI ASST 4 cut(s) 10, 206, 339, 467
Sfr303I CCGCGG 1 cut(s) 245
SfuI TTCGAA 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 2 cut(s) 550, 572
StyD4I CCNGG 2 cut(s) 16, 137
TaaI ACNGT 4 cut(s) 315, 476, 502, 631
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 170, 624
TasI AATT 2 cut(s) 550, 572
TauI GCSGC 4 cut(s) 145, 244, 247, 435
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 318, 598
TseFI GTSAC 3 cut(s) 3, 309, 470
TseI GCWGC 2 cut(s) 275, 435
Tsp45I GTSAC 3 cut(s) 3, 309, 470
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 2 cut(s) 346, 411
TspRI CASTG 2 cut(s) 318, 598
Tth111I GACNNNGTC 3 cut(s) 202, 307, 335
VneI GTGCAC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.