Rh5CG286000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016103
Physical Location & Seq
Forward (+)
31371712 .. 31374298
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG286000.1

Sequence Viewer

Length: 591 bp
ATGAGCATGAAGTTCTTCTTGATTTCATGTTGCGGAGTCACGTTGACAGCGCGCGCGACGCGACCCGGTTCTTCTCCTTCTATGTCTCCTTCCGCGCCAGGAAAGAAGATATCCCCCTCGGGCGGAAGAGTGTCGTCTTCGTCGCCCGCACGCCGAAACGCGCGCGGGAAAGTGTCGTCTTCATCCCCCTCGCGCGGAGGGATGTCGTCTACATCTCCCCAGCGGCGGGGGGCAGCAGGGCGTGGATTTTCGAATCCGCGCGTTGTTGCTGTTAGACAGACGAGGTCGGAACTTGGGTTGGCACCGACAGCGCAGCGGCTGCCGCGGCGGAAGAGCGGGAGGCCTGTAGGGTCGGCGGCTTCGGCCTTGCCTTATGCCGAGTGGACGCCGTCGCTGTGCACGATCGCCGAGGATAACGTCGTTGTCGTGAGGAGATCCGTTGGGGATCGGACGCCCAGCATTGAGCGAGCGGTTAACCGAAAGAGTGGTAGAGAAATGTCGCGAGTTCAAAGCCGCAGCCACACCGATGATTACGGGCGAGCTTCAGTCACAGTTATTCCGGCGTTTACTCCGACACCGTTCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

20.75

Weight (kDa)

11.87

Isoelectric Point (pI)

82.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccBSI CCGCTC 2 cut(s) 336, 470
AccI GTMKAC 1 cut(s) 209
AclWI GGATC 2 cut(s) 429, 453
AcuI CTGAAG 1 cut(s) 528
AcyI GRCGYC 2 cut(s) 386, 452
AfiI CCNNNNNNNGG 4 cut(s) 122, 194, 225, 226
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 90
Alw44I GTGCAC 1 cut(s) 397
AlwI GGATC 2 cut(s) 429, 453
AlwNI CAGNNNCTG 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 2 cut(s) 341, 363
ApaLI GTGCAC 1 cut(s) 397
ApeKI GCWGC 4 cut(s) 233, 313, 319, 516
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 9 cut(s) 52, 54, 56, 97, 163, 165, 195, 261, 313
AsuC2I CCSGG 1 cut(s) 66
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 129, 171
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 4 cut(s) 245, 306, 325, 528
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 66, 99
BmeT110I CYCGRG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 66, 99
BpiI GAAGAC 2 cut(s) 129, 171
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 2 cut(s) 386, 452
BsaJI CCNNGG 3 cut(s) 117, 323, 408
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 194, 225, 226
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 117, 323, 408
BseGI GGATG 2 cut(s) 182, 207
BseLI CCNNNNNNNGG 4 cut(s) 122, 194, 225, 226
BsePI GCGCGC 3 cut(s) 50, 52, 161
BseRI GAGGAG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 4 cut(s) 245, 306, 325, 528
BseYI CCCAGC 2 cut(s) 219, 455
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 343, 365
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 66, 560
BslI CCNNNNNNNGG 4 cut(s) 122, 194, 225, 226
BsmAI GTCTC 1 cut(s) 90
BsnI GGCC 2 cut(s) 343, 365
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 3 cut(s) 402, 434, 445
Bsp68I TCGCGA 1 cut(s) 502
BspANI GGCC 2 cut(s) 343, 365
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 2 cut(s) 429, 453
BspQI GCTCTTC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 301
BsrBI CCGCTC 2 cut(s) 336, 470
BssECI CCNNGG 3 cut(s) 117, 323, 408
BssHII GCGCGC 3 cut(s) 50, 52, 161
BssMI GATC 3 cut(s) 402, 434, 445
BssNI GRCGYC 2 cut(s) 386, 452
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 553, 579
Bst6I CTCTTC 2 cut(s) 121, 326
BstACI GRCGYC 2 cut(s) 386, 452
BstAPI GCANNNNNTGC 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 7 cut(s) 52, 54, 147, 151, 163, 468, 540
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 182, 207
BstHHI GCGC 9 cut(s) 52, 54, 56, 97, 163, 165, 195, 261, 313
BstKTI GATC 3 cut(s) 405, 437, 448
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 402, 434, 445
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 6 cut(s) 58, 308, 319, 322, 325, 362
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 64, 97
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 401
BstV1I GCAGC 4 cut(s) 245, 306, 325, 528
BstV2I GAAGAC 2 cut(s) 129, 171
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 2 cut(s) 343, 365
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 182, 207
BtuMI TCGCGA 1 cut(s) 502
Cac8I GCNNGC 7 cut(s) 52, 54, 147, 151, 163, 468, 540
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 9 cut(s) 52, 54, 56, 97, 163, 165, 195, 261, 313
Cfr42I CCGCGG 1 cut(s) 326
CseI GACGC 3 cut(s) 67, 394, 460
CviAII CATG 2 cut(s) 7, 27
CviJI RGCY 7 cut(s) 319, 343, 359, 365, 513, 519, 542
CviKI_1 RGCY 7 cut(s) 319, 343, 359, 365, 513, 519, 542
DpnI GATC 3 cut(s) 404, 436, 447
DpnII GATC 3 cut(s) 402, 434, 445
Eam1104I CTCTTC 2 cut(s) 121, 326
EarI CTCTTC 2 cut(s) 121, 326
EciI GGCGGA 2 cut(s) 138, 343
Eco147I AGGCCT 1 cut(s) 343
Eco32I GATATC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 111
FaeI CATG 2 cut(s) 10, 30
FaiI YATR 4 cut(s) 8, 28, 83, 375
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 2 cut(s) 6, 26
FauI CCCGC 4 cut(s) 154, 158, 219, 329
FblI GTMKAC 1 cut(s) 209
FokI GGATG 2 cut(s) 169, 214
GlaI GCGC 9 cut(s) 51, 53, 55, 96, 162, 164, 194, 260, 312
GsaI CCCAGC 2 cut(s) 223, 459
HaeIII GGCC 2 cut(s) 343, 365
HapII CCGG 2 cut(s) 66, 560
HgaI GACGC 3 cut(s) 67, 394, 460
HhaI GCGC 9 cut(s) 52, 54, 56, 97, 163, 165, 195, 261, 313
Hin1I GRCGYC 2 cut(s) 386, 452
Hin1II CATG 2 cut(s) 10, 30
Hin6I GCGC 9 cut(s) 50, 52, 54, 95, 161, 163, 193, 259, 311
HinP1I GCGC 9 cut(s) 50, 52, 54, 95, 161, 163, 193, 259, 311
HincII GTYRAC 2 cut(s) 45, 475
HindII GTYRAC 2 cut(s) 45, 475
HinfI GANTC 2 cut(s) 36, 253
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 2 cut(s) 66, 560
Hpy166II GTNNAC 6 cut(s) 45, 210, 384, 399, 475, 567
Hpy188I TCNGA 3 cut(s) 289, 450, 573
Hpy188III TCNNGA 3 cut(s) 19, 427, 501
Hpy8I GTNNAC 6 cut(s) 45, 210, 384, 399, 475, 567
Hpy99I CGWCG 4 cut(s) 61, 145, 394, 422
HpyAV CCTTC 2 cut(s) 87, 99
HpyCH4III ACNGT 2 cut(s) 553, 579
HpyCH4IV ACGT 2 cut(s) 41, 417
HpyCH4V TGCA 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 308, 319, 322, 325, 362
HpySE526I ACGT 2 cut(s) 41, 417
Hsp92I GRCGYC 2 cut(s) 386, 452
Hsp92II CATG 2 cut(s) 10, 30
HspAI GCGC 9 cut(s) 50, 52, 54, 95, 161, 163, 193, 259, 311
KspAI GTTAAC 1 cut(s) 475
KspI CCGCGG 1 cut(s) 326
Kzo9I GATC 3 cut(s) 402, 434, 445
LguI GCTCTTC 1 cut(s) 326
LpnPI CCDG 8 cut(s) 79, 84, 111, 222, 233, 357, 469, 573
Lsp1109I GCAGC 4 cut(s) 245, 306, 325, 528
MaeII ACGT 2 cut(s) 41, 417
MaeIII GTNAC 2 cut(s) 37, 547
MalI GATC 3 cut(s) 404, 436, 447
MauBI CGCGCGCG 2 cut(s) 52, 161
MbiI CCGCTC 2 cut(s) 336, 470
MboI GATC 3 cut(s) 402, 434, 445
MboII GAAGA 7 cut(s) 7, 63, 118, 129, 138, 171, 343
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 401
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 7 cut(s) 127, 191, 199, 276, 333, 403, 423
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 3 cut(s) 223, 316, 325
MspI CCGG 2 cut(s) 66, 560
MspR9I CCNGG 2 cut(s) 66, 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 58, 308, 319, 322, 325, 362
NciI CCSGG 1 cut(s) 66
NdeII GATC 3 cut(s) 402, 434, 445
NlaIII CATG 2 cut(s) 10, 30
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 2 cut(s) 403, 433
NmuCI GTSAC 2 cut(s) 37, 547
NruI TCGCGA 1 cut(s) 502
NspV TTCGAA 1 cut(s) 251
PauI GCGCGC 3 cut(s) 50, 52, 161
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 423
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 253
PflFI GACNNNGTC 2 cut(s) 283, 388
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 97
PspFI CCCAGC 2 cut(s) 219, 455
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 434
PsyI GACNNNGTC 2 cut(s) 283, 388
PteI GCGCGC 3 cut(s) 50, 52, 161
PvuI CGATCG 1 cut(s) 405
RruI TCGCGA 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 525
SacII CCGCGG 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 3 cut(s) 402, 434, 445
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 66, 99
SduI GDGCHC 1 cut(s) 401
SetI ASST 4 cut(s) 44, 287, 420, 544
SfcI CTRYAG 1 cut(s) 345
Sfr303I CCGCGG 1 cut(s) 326
SfuI TTCGAA 1 cut(s) 251
SgrBI CCGCGG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 525
SseBI AGGCCT 1 cut(s) 343
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 64, 97
TaaI ACNGT 2 cut(s) 553, 579
TaiI ACGT 2 cut(s) 44, 420
TaqI TCGA 1 cut(s) 251
TauI GCSGC 6 cut(s) 226, 319, 325, 328, 359, 516
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 2 cut(s) 37, 547
TseI GCWGC 4 cut(s) 233, 313, 319, 516
Tsp45I GTSAC 2 cut(s) 37, 547
TspDTI ATGAA 3 cut(s) 15, 23, 171
TspGWI ACGGA 1 cut(s) 427
Tth111I GACNNNGTC 2 cut(s) 283, 388
VneI GTGCAC 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.