pycom03g16360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016103
Physical Location & Seq
Reverse (-)
17528874 .. 17529519
646 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16360.2

Sequence Viewer

Length: 363 bp
ATGAAGTTCTTTTTAGAGTTCGTCTCGTGCTGCAGGGCCACTCGCCCCGCAACATCCACCAGCGAGCCGGCTCCGCTTTCTGAGGAGACGAGGTCGCTGGTGAGGGCGCCGAGCCGAATGATACGCTGCAGCAGAAAGCGCAGGAGCTCAGTAAATTCGTGCGATTGGAGGCCGTCGCTAAGCTCAATTTCCGAGGATAACGTTGCTGCGATGGTGGTGGATCGAACGGCTGGGATCGAGAGATCCGTGAAGAGGAAGAGCGGTCATGATCGAACAAAAGTTCAGGTCCGCAGCCACGACGAAGATTACGGGCGAGCTTCATTTGCGATTCCGGCGTTCTCTCCGATGCCTTTTATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.55

Weight (kDa)

10.05

Isoelectric Point (pI)

81.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 261
AciI CCGC 4 cut(s) 48, 74, 261, 289
AclI AACGTT 1 cut(s) 201
AclWI GGATC 3 cut(s) 228, 237, 242
AcsI RAATTY 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 147, 183, 317
AluI AGCT 3 cut(s) 147, 183, 317
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 28, 80
AlwI GGATC 3 cut(s) 228, 237, 242
AoxI GGCC 2 cut(s) 36, 170
ApeKI GCWGC 5 cut(s) 30, 126, 129, 206, 291
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 2 cut(s) 109, 141
AspS9I GGNCC 2 cut(s) 36, 286
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 149
BauI CACGAG 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 5 cut(s) 17, 113, 141, 193, 303
BccI CCATC 1 cut(s) 205
BceAI ACGGC 2 cut(s) 157, 243
BcoDI GTCTC 2 cut(s) 28, 80
BfmI CTRYAG 2 cut(s) 31, 127
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 5 cut(s) 31, 127, 130, 207, 292
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 5 cut(s) 32, 128, 131, 208, 293
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 36, 286
BmiI GGNNCC 2 cut(s) 72, 108
BmsI GCATC 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu1102I GCTNAGC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 72, 162
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 5 cut(s) 17, 113, 141, 193, 303
BseYI CCCAGC 1 cut(s) 230
BshFI GGCC 2 cut(s) 38, 172
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 68, 332
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 28, 80
BsmBI CGTCTC 2 cut(s) 28, 80
BsnI GGCC 2 cut(s) 38, 172
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 4 cut(s) 220, 234, 242, 268
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 4 cut(s) 48, 74, 261, 289
BspANI GGCC 2 cut(s) 38, 172
BspCNI CTCAG 2 cut(s) 73, 161
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 72, 108
BspMAI CTGCAG 2 cut(s) 35, 131
BspPI GGATC 3 cut(s) 228, 237, 242
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 4 cut(s) 220, 234, 242, 268
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 245, 251
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 65, 69, 315
BstDEI CTNAG 3 cut(s) 81, 148, 179
BstF5I GGATG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 109, 141
BstKTI GATC 4 cut(s) 223, 237, 245, 271
BstMAI GTCTC 2 cut(s) 28, 80
BstMBI GATC 4 cut(s) 220, 234, 242, 268
BstMWI GCNNNNNNNGC 4 cut(s) 73, 138, 323, 332
BstSFI CTRYAG 2 cut(s) 31, 127
BstV1I GCAGC 5 cut(s) 17, 113, 141, 193, 303
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 2 cut(s) 38, 172
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 53
Cac8I GCNNGC 3 cut(s) 65, 69, 315
CciI TCATGA 1 cut(s) 265
CfoI GCGC 2 cut(s) 109, 141
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 36, 286
CviAII CATG 1 cut(s) 266
DdeI CTNAG 3 cut(s) 81, 148, 179
DinI GGCGCC 1 cut(s) 108
DpnI GATC 4 cut(s) 222, 236, 244, 270
DpnII GATC 4 cut(s) 220, 234, 242, 268
Eam1104I CTCTTC 2 cut(s) 245, 251
EarI CTCTTC 2 cut(s) 245, 251
Ecl136II GAGCTC 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 149
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
Esp3I CGTCTC 2 cut(s) 28, 80
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 267, 356
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 5 cut(s) 31, 127, 130, 207, 292
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 5 cut(s) 31, 127, 130, 207, 292
GlaI GCGC 2 cut(s) 108, 140
GluI GCNGC 5 cut(s) 31, 127, 130, 207, 292
GsaI CCCAGC 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 2 cut(s) 38, 172
HapII CCGG 2 cut(s) 68, 332
HhaI GCGC 2 cut(s) 109, 141
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 2 cut(s) 107, 139
HinP1I GCGC 2 cut(s) 107, 139
HinfI GANTC 1 cut(s) 328
HpaII CCGG 2 cut(s) 68, 332
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 82, 193, 345
Hpy188III TCNNGA 2 cut(s) 238, 266
Hpy99I CGWCG 2 cut(s) 178, 302
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 33, 129
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 138, 323, 332
HpyF3I CTNAG 3 cut(s) 81, 148, 179
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 2 cut(s) 107, 139
KasI GGCGCC 1 cut(s) 106
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 4 cut(s) 220, 234, 242, 268
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 76, 144
LpnPI CCDG 8 cut(s) 19, 73, 81, 83, 127, 216, 269, 345
Lsp1109I GCAGC 5 cut(s) 17, 113, 141, 193, 303
LweI GCATC 1 cut(s) 336
MaeII ACGT 1 cut(s) 201
MalI GATC 4 cut(s) 222, 236, 244, 270
MbiI CCGCTC 1 cut(s) 261
MboI GATC 4 cut(s) 220, 234, 242, 268
MboII GAAGA 3 cut(s) 262, 268, 314
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 2 cut(s) 154, 186
Mly113I GGCGCC 1 cut(s) 107
MnlI CCTC 6 cut(s) 76, 84, 96, 162, 187, 246
MroNI GCCGGC 1 cut(s) 67
MspI CCGG 2 cut(s) 68, 332
MwoI GCNNNNNNNGC 4 cut(s) 73, 138, 323, 332
NaeI GCCGGC 1 cut(s) 69
NarI GGCGCC 1 cut(s) 107
NdeII GATC 4 cut(s) 220, 234, 242, 268
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 2 cut(s) 72, 108
NmeAIII GCCGAG 1 cut(s) 135
PagI TCATGA 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 5 cut(s) 32, 128, 131, 208, 293
PluTI GGCGCC 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 149
Psp1406I AACGTT 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 72, 108
PspPI GGNCC 2 cut(s) 36, 286
PstI CTGCAG 2 cut(s) 35, 131
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 251
SatI GCNGC 5 cut(s) 31, 127, 130, 207, 292
Sau3AI GATC 4 cut(s) 220, 234, 242, 268
Sau96I GGNCC 2 cut(s) 36, 286
SduI GDGCHC 1 cut(s) 149
SetI ASST 6 cut(s) 95, 149, 185, 204, 288, 319
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 2 cut(s) 31, 127
SfoI GGCGCC 1 cut(s) 108
SinI GGWCC 1 cut(s) 286
Sse9I AATT 2 cut(s) 154, 186
SsiI CCGC 4 cut(s) 48, 74, 261, 289
SspDI GGCGCC 1 cut(s) 106
SstI GAGCTC 1 cut(s) 149
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 223, 237, 271
TasI AATT 2 cut(s) 154, 186
TfiI GAWTC 1 cut(s) 328
TseI GCWGC 5 cut(s) 30, 126, 129, 206, 291
TspDTI ATGAA 2 cut(s) 17, 309
TspGWI ACGGA 1 cut(s) 235
Tth111I GACNNNGTC 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.