Rh5DG261900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016103
Physical Location & Seq
Forward (+)
31426304 .. 31428454
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG261900.1

Sequence Viewer

Length: 585 bp
ATGAAGTTCTTCTTGATTTCATGTTGCGGAGTCACGTTGACCGCTCGAGCGACGCGACCCAGTTCTTCTCCTTCTATGTCGCCTTCCGCGCCAGGAAAGAAGATACCTCCCTCGCGCGGAAGAGTGTCGTCTTCGTCTCCCGCACGCGGAAACGGGCGCAGGAAAGTGTCGTCTTCATCCCCCTCGCGCGGAGGGATGTCGTCTACATCTCCCCAGCGGCGGGGGCCAGCAGGGCGCGGATTTTCAAATCCGCGCGTTGTTGCTGTTAGACAGACGAGGTCGGAACTTGGGTTGGCACCGACAGCACAGCGGCTGCCGCGGCGGAAGAGCGGGAGGCCGGTAGGGTCGGCGGCTTCGGCCTTGCCTTATGCCGAGTGGACGCCGTCGCTGTGCTCGATCGCCGAGGACAACGTCGTTGTCGTGAGGAGATCCGTTGGGGATCGGACGCCCAGCATTGAGCGAGCGGTTAACGGAAAGAGTGGTAGAGAAATGTCGCGAGCTCAAAGCCGCAGCCACACCGATGATTACGGGCGAGCTTCAGTCACAGTTATTCCGGCGTTTACTCCGACACCGTTCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.54

Weight (kDa)

11.87

Isoelectric Point (pI)

78.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AccBSI CCGCTC 3 cut(s) 44, 330, 464
AccI GTMKAC 1 cut(s) 203
AclWI GGATC 2 cut(s) 423, 447
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 2 cut(s) 380, 446
AfiI CCNNNNNNNGG 5 cut(s) 116, 146, 188, 219, 220
AgsI TTSAA 1 cut(s) 246
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 500, 536
AluI AGCT 2 cut(s) 500, 536
Alw21I GWGCWC 2 cut(s) 395, 502
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 423, 447
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 3 cut(s) 224, 335, 357
ApeKI GCWGC 2 cut(s) 313, 510
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 6 cut(s) 91, 117, 159, 189, 237, 255
AspS9I GGNCC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 45
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 2 cut(s) 123, 165
Bbv12I GWGCWC 2 cut(s) 395, 502
BbvI GCAGC 2 cut(s) 300, 522
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 232
BisI GCNGC 8 cut(s) 218, 311, 314, 317, 320, 351, 508, 511
BlsI GCNGC 8 cut(s) 219, 312, 315, 318, 321, 352, 509, 512
Bme1390I CCNGG 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 225, 297
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 2 cut(s) 123, 165
BsaHI GRCGYC 2 cut(s) 380, 446
BsaJI CCNNGG 2 cut(s) 317, 402
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 146, 188, 219, 220
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 317, 402
BseGI GGATG 2 cut(s) 176, 201
BseLI CCNNNNNNNGG 5 cut(s) 116, 146, 188, 219, 220
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 300, 522
BseYI CCCAGC 2 cut(s) 213, 449
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 3 cut(s) 226, 337, 359
BshNI GGYRCC 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 2 cut(s) 395, 502
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 338, 554
BslI CCNNNNNNNGG 5 cut(s) 116, 146, 188, 219, 220
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 3 cut(s) 226, 337, 359
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 395, 502
Bsp143I GATC 3 cut(s) 396, 428, 439
Bsp68I TCGCGA 1 cut(s) 496
BspANI GGCC 3 cut(s) 226, 337, 359
BspLI GGNNCC 2 cut(s) 225, 297
BspPI GGATC 2 cut(s) 423, 447
BspQI GCTCTTC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 295
BsrBI CCGCTC 3 cut(s) 44, 330, 464
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 317, 402
BssMI GATC 3 cut(s) 396, 428, 439
BssNI GRCGYC 2 cut(s) 380, 446
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 547, 573
Bst6I CTCTTC 2 cut(s) 115, 320
BstACI GRCGYC 2 cut(s) 380, 446
BstC8I GCNNGC 5 cut(s) 145, 228, 462, 498, 534
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 176, 201
BstHHI GCGC 6 cut(s) 91, 117, 159, 189, 237, 255
BstKTI GATC 3 cut(s) 399, 431, 442
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 3 cut(s) 396, 428, 439
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 7 cut(s) 88, 223, 232, 302, 316, 319, 356
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 300, 522
BstV2I GAAGAC 2 cut(s) 123, 165
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BsuRI GGCC 3 cut(s) 226, 337, 359
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 176, 201
BtuMI TCGCGA 1 cut(s) 496
Cac8I GCNNGC 5 cut(s) 145, 228, 462, 498, 534
CaiI CAGNNNCTG 1 cut(s) 313
CfoI GCGC 6 cut(s) 91, 117, 159, 189, 237, 255
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 224
Cfr42I CCGCGG 1 cut(s) 320
CseI GACGC 3 cut(s) 61, 388, 454
CviAII CATG 1 cut(s) 21
CviJI RGCY 9 cut(s) 226, 313, 337, 353, 359, 500, 507, 513, 536
CviKI_1 RGCY 9 cut(s) 226, 313, 337, 353, 359, 500, 507, 513, 536
DpnI GATC 3 cut(s) 398, 430, 441
DpnII GATC 3 cut(s) 396, 428, 439
Eam1104I CTCTTC 2 cut(s) 115, 320
EarI CTCTTC 2 cut(s) 115, 320
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 1 cut(s) 24
FaiI YATR 3 cut(s) 22, 77, 369
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 20
FauI CCCGC 3 cut(s) 148, 213, 323
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 8 cut(s) 218, 311, 314, 317, 320, 351, 508, 511
FokI GGATG 2 cut(s) 163, 208
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 8 cut(s) 218, 311, 314, 317, 320, 351, 508, 511
GlaI GCGC 6 cut(s) 90, 116, 158, 188, 236, 254
GluI GCNGC 8 cut(s) 218, 311, 314, 317, 320, 351, 508, 511
GsaI CCCAGC 2 cut(s) 217, 453
HaeIII GGCC 3 cut(s) 226, 337, 359
HapII CCGG 2 cut(s) 338, 554
HgaI GACGC 3 cut(s) 61, 388, 454
HhaI GCGC 6 cut(s) 91, 117, 159, 189, 237, 255
Hin1I GRCGYC 2 cut(s) 380, 446
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 6 cut(s) 89, 115, 157, 187, 235, 253
HinP1I GCGC 6 cut(s) 89, 115, 157, 187, 235, 253
HincII GTYRAC 2 cut(s) 39, 469
HindII GTYRAC 2 cut(s) 39, 469
HinfI GANTC 1 cut(s) 30
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 2 cut(s) 338, 554
Hpy166II GTNNAC 5 cut(s) 39, 204, 378, 469, 561
Hpy188I TCNGA 3 cut(s) 283, 444, 567
Hpy188III TCNNGA 3 cut(s) 13, 421, 495
Hpy8I GTNNAC 5 cut(s) 39, 204, 378, 469, 561
Hpy99I CGWCG 3 cut(s) 55, 388, 416
HpyAV CCTTC 2 cut(s) 81, 93
HpyCH4III ACNGT 2 cut(s) 547, 573
HpyCH4IV ACGT 2 cut(s) 35, 411
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 223, 232, 302, 316, 319, 356
HpySE526I ACGT 2 cut(s) 35, 411
Hsp92I GRCGYC 2 cut(s) 380, 446
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 6 cut(s) 89, 115, 157, 187, 235, 253
KspAI GTTAAC 1 cut(s) 469
KspI CCGCGG 1 cut(s) 320
Kzo9I GATC 3 cut(s) 396, 428, 439
LguI GCTCTTC 1 cut(s) 320
Lsp1109I GCAGC 2 cut(s) 300, 522
MaeII ACGT 2 cut(s) 35, 411
MaeIII GTNAC 2 cut(s) 31, 541
MalI GATC 3 cut(s) 398, 430, 441
MbiI CCGCTC 3 cut(s) 44, 330, 464
MboI GATC 3 cut(s) 396, 428, 439
MboII GAAGA 6 cut(s) 57, 112, 123, 132, 165, 337
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 395, 502
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 8 cut(s) 117, 121, 185, 193, 270, 327, 397, 417
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 3 cut(s) 217, 310, 319
MspI CCGG 2 cut(s) 338, 554
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 7 cut(s) 88, 223, 232, 302, 316, 319, 356
NdeII GATC 3 cut(s) 396, 428, 439
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 2 cut(s) 225, 297
NmeAIII GCCGAG 2 cut(s) 397, 427
NmuCI GTSAC 2 cut(s) 31, 541
NruI TCGCGA 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 3 cut(s) 52, 392, 417
PdmI GAANNNNTTC 1 cut(s) 8
PflFI GACNNNGTC 3 cut(s) 277, 382, 410
PkrI GCNGC 8 cut(s) 219, 312, 315, 318, 321, 352, 509, 512
Ple19I CGATCG 1 cut(s) 399
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 91
PspFI CCCAGC 2 cut(s) 213, 449
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 225, 297
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 428
PsyI GACNNNGTC 3 cut(s) 277, 382, 410
PvuI CGATCG 1 cut(s) 399
RruI TCGCGA 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 502
SacII CCGCGG 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 8 cut(s) 218, 311, 314, 317, 320, 351, 508, 511
Sau3AI GATC 3 cut(s) 396, 428, 439
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 395, 502
SetI ASST 6 cut(s) 38, 109, 281, 414, 502, 538
Sfr274I CTCGAG 1 cut(s) 45
Sfr303I CCGCGG 1 cut(s) 320
SgrBI CCGCGG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 547, 573
TaiI ACGT 2 cut(s) 38, 414
TaqI TCGA 2 cut(s) 46, 395
TauI GCSGC 6 cut(s) 220, 313, 319, 322, 353, 510
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 2 cut(s) 31, 541
TseI GCWGC 2 cut(s) 313, 510
Tsp45I GTSAC 2 cut(s) 31, 541
TspDTI ATGAA 3 cut(s) 9, 17, 165
TspGWI ACGGA 2 cut(s) 421, 486
Tth111I GACNNNGTC 3 cut(s) 277, 382, 410
XhoI CTCGAG 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.