Rorug05G0159700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016103
Physical Location & Seq
Forward (+)
14894007 .. 14899705
5699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0159700.1

Sequence Viewer

Length: 900 bp
ATGTCGATAAATACGGGCCATAACTGTTGCAGCAAACAGAAAGTGAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTAATGAATCACATACACAACTCTGGCCATGGTTCCTGGAGCTCTATACCAAAAATAGCTGGTTTGGAGAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGATAAACTACTTGAGGCCAGATCTGAAGAGGGGTTCATTTTCTGAGCAAGAAGAGAGAATCATCATAGATGTTCATAGGGTTGTAGGCAACAGGTGGGCTCAGATAGCCAAGCAAATGCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATCTCTCAAGGTCTGGATCTCAACACTCACAATCTTATCATCCCAGCTGCTTCTGATTCCAAATCTAGCCATGATAGCAGCTCATTGCATGGAAGCTCATCAATGACCATACCAAATCAAAGCCCTAATATGGTTTGGACCGATCATTTCCAAGAGCAATATCCAAGAGGAAGCCAACCCTCAATGGAAAAATCTAAAGTGCCGACTATCTCATCTTTTGCTCATCACTCCTATCCATCGGAGCTCGATATTATAATCGAAAATTGCAAAACATGGGGTACTGGTAGTAGCATTGAATCCACCACTGCAGAACCCGCAGAGATGGAATATATGTCAATGAAAGAAGAACAGAAGGAGGAAAGTTGTGAAGTGCAAACTGAAAACGGCAGCTGTTCTGTGTTGAATTATAATGGTCGGCAAACTAGTATGGATTCTAGTTCATTCGGGAGCTGTAACTTGTCAAATTTTGACTTTGTGGAGTCTACACTAGTGCCTTGTGAAATGGATTACCATCTGAGGCCACTTGCATGGTATCGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.87

Weight (kDa)

6.31

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 78 1.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 2.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 2.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 611, 765
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 839
AciI CCGC 1 cut(s) 672
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 325, 820
AcuI CTGAAG 2 cut(s) 87, 224
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 2 cut(s) 653, 760
AhlI ACTAGT 2 cut(s) 779, 844
AjnI CCWGG 2 cut(s) 116, 298
AluBI AGCT 9 cut(s) 82, 123, 140, 404, 438, 453, 601, 747, 807
AluI AGCT 9 cut(s) 82, 123, 140, 404, 438, 453, 601, 747, 807
Alw21I GWGCWC 2 cut(s) 125, 603
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 381
AoxI GGCC 4 cut(s) 16, 106, 194, 875
ApeKI GCWGC 4 cut(s) 30, 404, 435, 744
ApoI RAATTY 2 cut(s) 325, 820
AspS9I GGNCC 2 cut(s) 16, 495
AvaII GGWCC 1 cut(s) 495
BalI TGGCCA 1 cut(s) 108
BanII GRGCYC 3 cut(s) 125, 280, 603
Bbv12I GWGCWC 2 cut(s) 125, 603
BbvI GCAGC 4 cut(s) 42, 391, 447, 756
BccI CCATC 3 cut(s) 601, 673, 876
BceAI ACGGC 1 cut(s) 757
BciT130I CCWGG 2 cut(s) 118, 300
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 2 cut(s) 779, 844
BfaI CTAG 4 cut(s) 423, 780, 792, 845
BfmI CTRYAG 1 cut(s) 663
BfuAI ACCTGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 31, 405, 436, 745
BlsI GCNGC 4 cut(s) 32, 406, 437, 746
Bme1390I CCNGG 2 cut(s) 118, 300
Bme18I GGWCC 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 16, 495
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 118, 300
BmsI GCATC 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 2 cut(s) 211, 348
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 118, 300
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 213, 293, 863
BseNI ACTGG 1 cut(s) 643
BseXI GCAGC 4 cut(s) 42, 391, 447, 756
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 4 cut(s) 18, 108, 196, 877
BsiHKAI GWGCWC 2 cut(s) 125, 603
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 4 cut(s) 18, 108, 196, 877
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 125, 280, 603
Bsp143I GATC 3 cut(s) 199, 373, 499
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 672
BspANI GGCC 4 cut(s) 18, 108, 196, 877
BspCNI CTCAG 3 cut(s) 214, 292, 864
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 667
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 199, 373, 499
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 118, 300
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 3 cut(s) 155, 200, 225
BstDEI CTNAG 3 cut(s) 222, 279, 872
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 396
BstKTI GATC 3 cut(s) 202, 376, 502
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 199, 373, 499
BstMWI GCNNNNNNNGC 3 cut(s) 284, 432, 671
BstNI CCWGG 2 cut(s) 118, 300
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 116, 298
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 4 cut(s) 42, 391, 447, 756
BstX2I RGATCY 2 cut(s) 199, 373
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 2 cut(s) 199, 373
BsuRI GGCC 4 cut(s) 18, 108, 196, 877
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 1 cut(s) 660
BveI ACCTGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 16, 495
Csp6I GTAC 1 cut(s) 636
CviAII CATG 6 cut(s) 110, 339, 428, 446, 630, 885
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 3 cut(s) 222, 279, 872
DpnI GATC 3 cut(s) 201, 375, 501
DpnII GATC 3 cut(s) 199, 373, 499
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 155, 200, 225
EarI CTCTTC 3 cut(s) 155, 200, 225
Ecl136II GAGCTC 2 cut(s) 123, 601
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 3 cut(s) 125, 280, 603
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 495
Eco53kI GAGCTC 2 cut(s) 123, 601
Eco57I CTGAAG 2 cut(s) 87, 224
EcoICRI GAGCTC 2 cut(s) 123, 601
EcoRII CCWGG 2 cut(s) 116, 298
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 3 cut(s) 125, 280, 603
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 113, 342, 431, 449, 633, 888
FatI CATG 6 cut(s) 109, 338, 427, 445, 629, 884
FauI CCCGC 1 cut(s) 679
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 4 cut(s) 31, 405, 436, 745
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 3 cut(s) 125, 280, 603
Fsp4HI GCNGC 4 cut(s) 31, 405, 436, 745
FspBI CTAG 4 cut(s) 423, 780, 792, 845
GluI GCNGC 4 cut(s) 31, 405, 436, 745
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 4 cut(s) 18, 108, 196, 877
Hin1II CATG 6 cut(s) 113, 342, 431, 449, 633, 888
HinfI GANTC 6 cut(s) 88, 237, 413, 653, 788, 836
Hpy166II GTNNAC 1 cut(s) 840
Hpy188I TCNGA 6 cut(s) 204, 223, 282, 412, 598, 873
Hpy188III TCNNGA 6 cut(s) 65, 322, 331, 346, 371, 802
Hpy8I GTNNAC 1 cut(s) 840
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 8 cut(s) 30, 168, 342, 445, 624, 665, 730, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 432, 671
HpyF3I CTNAG 3 cut(s) 222, 279, 872
Hsp92II CATG 6 cut(s) 113, 342, 431, 449, 633, 888
Kzo9I GATC 3 cut(s) 199, 373, 499
LmnI GCTCC 3 cut(s) 120, 598, 804
Lsp1109I GCAGC 4 cut(s) 42, 391, 447, 756
LweI GCATC 1 cut(s) 351
MaeI CTAG 4 cut(s) 423, 780, 792, 845
MaeIII GTNAC 1 cut(s) 809
MalI GATC 3 cut(s) 201, 375, 501
MboI GATC 3 cut(s) 199, 373, 499
MboII GAAGA 8 cut(s) 80, 83, 172, 217, 242, 315, 361, 713
MflI RGATCY 2 cut(s) 199, 373
MhlI GDGCHC 3 cut(s) 125, 280, 603
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 5 cut(s) 325, 619, 760, 820, 895
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 845
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 344
MscI TGGCCA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 883
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 404, 747
MspR9I CCNGG 2 cut(s) 118, 300
MvaI CCWGG 2 cut(s) 118, 300
MwoI GCNNNNNNNGC 3 cut(s) 284, 432, 671
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 199, 373, 499
NlaIII CATG 6 cut(s) 113, 342, 431, 449, 633, 888
NlaIV GGNNCC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 344
PfeI GAWTC 5 cut(s) 88, 237, 413, 653, 788
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 32, 406, 437, 746
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
PshAI GACNNNNGTC 1 cut(s) 58
PsiI TTATAA 2 cut(s) 611, 765
Psp124BI GAGCTC 2 cut(s) 125, 603
Psp6I CCWGG 2 cut(s) 116, 298
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 116, 298
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 16, 495
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 2 cut(s) 199, 373
PvuII CAGCTG 2 cut(s) 404, 747
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
RseI CAYNNNNRTG 1 cut(s) 883
SacI GAGCTC 2 cut(s) 125, 603
SatI GCNGC 4 cut(s) 31, 405, 436, 745
Sau3AI GATC 3 cut(s) 199, 373, 499
Sau96I GGNCC 2 cut(s) 16, 495
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 2 cut(s) 118, 300
SduI GDGCHC 3 cut(s) 125, 280, 603
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 883
SmlI CTYRAG 2 cut(s) 190, 363
SmoI CTYRAG 2 cut(s) 190, 363
SpeI ACTAGT 2 cut(s) 779, 844
Sse9I AATT 5 cut(s) 325, 619, 760, 820, 895
SsiI CCGC 1 cut(s) 672
SspMI CTAG 4 cut(s) 423, 780, 792, 845
SstI GAGCTC 2 cut(s) 125, 603
StyD4I CCNGG 2 cut(s) 116, 298
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 5, 603, 615
TaqII GACCGA 1 cut(s) 512
TasI AATT 5 cut(s) 325, 619, 760, 820, 895
TfiI GAWTC 5 cut(s) 88, 237, 413, 653, 788
TscAI CASTG 1 cut(s) 667
TseI GCWGC 4 cut(s) 30, 404, 435, 744
TspDTI ATGAA 5 cut(s) 101, 204, 242, 710, 786
TspRI CASTG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 2 cut(s) 325, 820
XmiI GTMKAC 1 cut(s) 839
XspI CTAG 4 cut(s) 423, 780, 792, 845
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.