Prupe.4G197700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016103
Physical Location & Seq
Forward (+)
12103465 .. 12104420
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G197700.1

Sequence Viewer

Length: 378 bp
ATGAAGTTCTTGTTGGAGTTCGTGTCTTGCTGCGGGATCGCACGCCCAGCAACAACAGGTGAGCAGGCTCCTCTCTCTGAGGAGACCAGCTCGCTTGTGCCGCGCCGAATGCGCCGTCGCAGAAAGCGGGGAAGGCCCGGGAACTCGGGCTCCACGTCGCCGAATTCGGTAGAGTGGAGGCCGTCGCTCACCTCGATTTCCGAGGACAACGTAGTTGCGATGGTGGTGGATCGGACGGCCGAGGTTGAGCGAGCCATGAAGAGGAAGAGCGGCCAGAGTCGGACGATAGCTCAGGTCCGCAGCCACGGCGAGGATTACGGGCAAGCTTCACTTACGACGGCGATTCCGGCTTTCTCTCCGACGCCGTTTATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.79

Weight (kDa)

10.44

Isoelectric Point (pI)

66.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AccII CGCG 1 cut(s) 103
AciI CCGC 5 cut(s) 33, 101, 127, 270, 298
AclWI GGATC 2 cut(s) 44, 237
AcoI YGGCCR 2 cut(s) 237, 271
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 261, 310
AjiI CACGTC 1 cut(s) 156
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 3 cut(s) 90, 290, 326
AluI AGCT 3 cut(s) 90, 290, 326
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 2 cut(s) 44, 237
Ama87I CYCGRG 2 cut(s) 137, 145
AoxI GGCC 4 cut(s) 134, 179, 237, 271
ApeKI GCWGC 2 cut(s) 30, 300
ApoI RAATTY 1 cut(s) 163
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspLEI GCGC 2 cut(s) 105, 114
AspS9I GGNCC 2 cut(s) 135, 295
AsuC2I CCSGG 2 cut(s) 138, 139
AsuHPI GGTGA 2 cut(s) 71, 181
AvaI CYCGRG 2 cut(s) 137, 145
AvaII GGWCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 17, 312
BccI CCATC 1 cut(s) 214
BceAI ACGGC 6 cut(s) 99, 166, 252, 322, 349, 354
BcnI CCSGG 2 cut(s) 138, 139
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 4 cut(s) 31, 101, 271, 301
BlsI GCNGC 4 cut(s) 32, 102, 272, 302
Bme1390I CCNGG 2 cut(s) 138, 139
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 137, 145
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 135, 295
BmiI GGNNCC 2 cut(s) 69, 151
BmrFI CCNGG 2 cut(s) 138, 139
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 138, 139
BsaHI GRCGYC 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 137, 201, 240, 304
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 310
BseDI CCNNGG 4 cut(s) 137, 201, 240, 304
BseLI CCNNNNNNNGG 2 cut(s) 261, 310
BseMII CTCAG 2 cut(s) 69, 305
BseRI GAGGAG 2 cut(s) 60, 95
BseX3I CGGCCG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 17, 312
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 136, 181, 239, 273
BsiEI CGRYCG 1 cut(s) 240
BsiHKCI CYCGRG 2 cut(s) 137, 145
BsiSI CCGG 2 cut(s) 138, 347
BslI CCNNNNNNNGG 2 cut(s) 261, 310
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 4 cut(s) 136, 181, 239, 273
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 2 cut(s) 137, 145
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 36, 229
BspACI CCGC 5 cut(s) 33, 101, 127, 270, 298
BspANI GGCC 4 cut(s) 136, 181, 239, 273
BspCNI CTCAG 2 cut(s) 70, 304
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 69, 151
BspPI GGATC 2 cut(s) 44, 237
BspQI GCTCTTC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 270
BssECI CCNNGG 4 cut(s) 137, 201, 240, 304
BssMI GATC 2 cut(s) 36, 229
BssNI GRCGYC 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 254, 260
BstACI GRCGYC 1 cut(s) 362
BstC8I GCNNGC 5 cut(s) 43, 66, 92, 252, 324
BstDEI CTNAG 2 cut(s) 78, 291
BstDSI CCRYGG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 2 cut(s) 105, 114
BstKTI GATC 2 cut(s) 39, 232
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 36, 229
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 7 cut(s) 47, 100, 109, 111, 133, 306, 347
BstSCI CCNGG 2 cut(s) 136, 137
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 17, 312
BstZI CGGCCG 1 cut(s) 237
BsuRI GGCC 4 cut(s) 136, 181, 239, 273
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 156
Cac8I GCNNGC 5 cut(s) 43, 66, 92, 252, 324
CfoI GCGC 2 cut(s) 105, 114
Cfr13I GGNCC 2 cut(s) 135, 295
Cfr9I CCCGGG 1 cut(s) 137
CseI GACGC 1 cut(s) 370
CviAII CATG 1 cut(s) 256
DdeI CTNAG 2 cut(s) 78, 291
DpnI GATC 2 cut(s) 38, 231
DpnII GATC 2 cut(s) 36, 229
EaeI YGGCCR 2 cut(s) 237, 271
EagI CGGCCG 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 254, 260
EarI CTCTTC 2 cut(s) 254, 260
EclXI CGGCCG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 137, 145
EcoRI GAATTC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 257, 371
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 1 cut(s) 255
FauI CCCGC 2 cut(s) 26, 120
Fnu4HI GCNGC 4 cut(s) 31, 101, 271, 301
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 31, 101, 271, 301
GlaI GCGC 2 cut(s) 104, 113
GluI GCNGC 4 cut(s) 31, 101, 271, 301
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 136, 181, 239, 273
HapII CCGG 2 cut(s) 138, 347
HgaI GACGC 1 cut(s) 370
HhaI GCGC 2 cut(s) 105, 114
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 2 cut(s) 103, 112
HinP1I GCGC 2 cut(s) 103, 112
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 277, 343
HpaII CCGG 2 cut(s) 138, 347
HphI GGTGA 2 cut(s) 71, 181
Hpy188I TCNGA 5 cut(s) 79, 202, 234, 282, 360
Hpy99I CGWCG 5 cut(s) 120, 160, 187, 340, 364
HpyAV CCTTC 1 cut(s) 126
HpyCH4IV ACGT 2 cut(s) 155, 210
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 100, 109, 111, 133, 306, 347
HpyF3I CTNAG 2 cut(s) 78, 291
HpySE526I ACGT 2 cut(s) 155, 210
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 2 cut(s) 103, 112
Kzo9I GATC 2 cut(s) 36, 229
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 73, 155
LpnPI CCDG 8 cut(s) 42, 50, 60, 100, 151, 278, 287, 360
Lsp1109I GCAGC 2 cut(s) 17, 312
MaeII ACGT 2 cut(s) 155, 210
MalI GATC 2 cut(s) 38, 231
MbiI CCGCTC 1 cut(s) 270
MboI GATC 2 cut(s) 36, 229
MboII GAAGA 2 cut(s) 271, 277
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 8 cut(s) 73, 81, 171, 196, 202, 235, 255, 304
MspI CCGG 2 cut(s) 138, 347
MspR9I CCNGG 2 cut(s) 138, 139
Mva1269I GAATGC 1 cut(s) 114
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 7 cut(s) 47, 100, 109, 111, 133, 306, 347
NciI CCSGG 2 cut(s) 138, 139
NdeII GATC 2 cut(s) 36, 229
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 69, 151
NmeAIII GCCGAG 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 152, 191
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 32, 102, 272, 302
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 69, 151
PspPI GGNCC 2 cut(s) 135, 295
SapI GCTCTTC 1 cut(s) 260
SatI GCNGC 4 cut(s) 31, 101, 271, 301
Sau3AI GATC 2 cut(s) 36, 229
Sau96I GGNCC 2 cut(s) 135, 295
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 138, 139
SduI GDGCHC 1 cut(s) 152
SetI ASST 9 cut(s) 61, 92, 158, 194, 213, 246, 292, 297, 328
SinI GGWCC 1 cut(s) 295
SmaI CCCGGG 1 cut(s) 139
Sse9I AATT 1 cut(s) 163
SsiI CCGC 5 cut(s) 33, 101, 127, 270, 298
StyD4I CCNGG 2 cut(s) 136, 137
TaiI ACGT 2 cut(s) 158, 213
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 163
TauI GCSGC 2 cut(s) 103, 273
TfiI GAWTC 1 cut(s) 343
TseI GCWGC 2 cut(s) 30, 300
TspDTI ATGAA 2 cut(s) 17, 272
TspMI CCCGGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 163
XmaI CCCGGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.