RLG00000033742

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016103
Physical Location & Seq
Forward (+)
31639550 .. 31640193
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033742

Sequence Viewer

Length: 510 bp
ATGTCGCCTTCCGCGCCCGGAAAGAAGATATCCCCCTCGCGCGGAGGAGTTTCGTCTTCGTCTCCCGCACGCGGAAACGCGCGCGGGAAAGTGTCTTCTTCACCCCCCTCGCGCGGAGGGATGTCCTCTGCATCTCCCCGGCGACGGGGACCAGCAGGGCGCAGATTTTCGAATCCGCACGTTGTTGCTGTTAGACAGACGAGGTCGGAACTTGGGTTGGCACCGACAGCACAGAGGCAGCCGCGGCGGAAGAGCGGGAGGCCGGTAGGGTCGGCGGCTTCGGCCTTGCCTTATGCCGAGTGGACGCCGTCGCTGTGCACGATCGCCGAGGACAACGTCGTTGTCGTGAGGAGATCAGTTGGGGATCGGACGCCCAGCATTGAGCGAGCGGTTAACGGAAAGAGAGGTAGAGAAATGTCGCGAGTTCAAAGCCGCAGCCACACCGATGATTACGGGCGAGCTTCAGCCACAGTTATTCCGGCGTTTACTCCGACGCCGTTCTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

17.89

Weight (kDa)

11.93

Isoelectric Point (pI)

89.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccBSI CCGCTC 2 cut(s) 255, 389
AclWI GGATC 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 3 cut(s) 305, 371, 494
AfiI CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
AgsI TTSAA 1 cut(s) 428
AluBI AGCT 1 cut(s) 461
AluI AGCT 1 cut(s) 461
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 1 cut(s) 372
AoxI GGCC 2 cut(s) 260, 282
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 238, 435
AspLEI GCGC 6 cut(s) 16, 42, 82, 84, 114, 162
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 2 cut(s) 18, 139
AsuHPI GGTGA 1 cut(s) 93
AsuII TTCGAA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 48, 87
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 250, 447
BceAI ACGGC 2 cut(s) 292, 481
BcnI CCSGG 2 cut(s) 18, 139
BcoDI GTCTC 1 cut(s) 66
BisI GCNGC 6 cut(s) 239, 242, 245, 276, 433, 436
BlsI GCNGC 6 cut(s) 240, 243, 246, 277, 434, 437
Bme1390I CCNGG 2 cut(s) 18, 139
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 150, 222
BmrFI CCNGG 2 cut(s) 18, 139
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 2 cut(s) 48, 87
Bpu14I TTCGAA 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 18, 139
BsaHI GRCGYC 3 cut(s) 305, 371, 494
BsaJI CCNNGG 3 cut(s) 137, 242, 327
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
Bse118I RCCGGY 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 137, 242, 327
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
BsePI GCGCGC 1 cut(s) 80
BseRI GAGGAG 2 cut(s) 60, 364
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 250, 447
BseYI CCCAGC 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 262, 284
BshNI GGYRCC 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 4 cut(s) 18, 139, 263, 479
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 5 cut(s) 41, 71, 113, 144, 145
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 2 cut(s) 262, 284
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 3 cut(s) 321, 353, 364
Bsp68I TCGCGA 1 cut(s) 421
BspANI GGCC 2 cut(s) 262, 284
BspLI GGNNCC 2 cut(s) 150, 222
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 220
BsrBI CCGCTC 2 cut(s) 255, 389
BsrFI RCCGGY 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 137, 242, 327
BssHII GCGCGC 1 cut(s) 80
BssMI GATC 3 cut(s) 321, 353, 364
BssNI GRCGYC 3 cut(s) 305, 371, 494
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 3 cut(s) 305, 371, 494
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 4 cut(s) 70, 82, 387, 459
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 6 cut(s) 16, 42, 82, 84, 114, 162
BstKTI GATC 3 cut(s) 324, 356, 367
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 321, 353, 364
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 4 cut(s) 13, 227, 244, 281
BstSCI CCNGG 2 cut(s) 16, 137
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 250, 447
BstV2I GAAGAC 2 cut(s) 48, 87
BsuRI GGCC 2 cut(s) 262, 284
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 126
BtuMI TCGCGA 1 cut(s) 421
Cac8I GCNNGC 4 cut(s) 70, 82, 387, 459
CfoI GCGC 6 cut(s) 16, 42, 82, 84, 114, 162
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 245
CseI GACGC 3 cut(s) 313, 379, 502
CviJI RGCY 8 cut(s) 241, 262, 278, 284, 432, 438, 461, 467
CviKI_1 RGCY 8 cut(s) 241, 262, 278, 284, 432, 438, 461, 467
DpnI GATC 3 cut(s) 323, 355, 366
DpnII GATC 3 cut(s) 321, 353, 364
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 262
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 447
EcoRV GATATC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 66
FaiI YATR 1 cut(s) 294
FaqI GGGAC 1 cut(s) 162
FauI CCCGC 3 cut(s) 73, 77, 248
Fnu4HI GCNGC 6 cut(s) 239, 242, 245, 276, 433, 436
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 6 cut(s) 239, 242, 245, 276, 433, 436
GlaI GCGC 6 cut(s) 15, 41, 81, 83, 113, 161
GluI GCNGC 6 cut(s) 239, 242, 245, 276, 433, 436
GsaI CCCAGC 1 cut(s) 378
HaeIII GGCC 2 cut(s) 262, 284
HapII CCGG 4 cut(s) 18, 139, 263, 479
HgaI GACGC 3 cut(s) 313, 379, 502
HhaI GCGC 6 cut(s) 16, 42, 82, 84, 114, 162
Hin1I GRCGYC 3 cut(s) 305, 371, 494
Hin6I GCGC 6 cut(s) 14, 40, 80, 82, 112, 160
HinP1I GCGC 6 cut(s) 14, 40, 80, 82, 112, 160
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 172
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 4 cut(s) 18, 139, 263, 479
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 4 cut(s) 303, 318, 394, 486
Hpy188I TCNGA 3 cut(s) 208, 369, 492
Hpy188III TCNNGA 2 cut(s) 346, 420
Hpy8I GTNNAC 4 cut(s) 303, 318, 394, 486
Hpy99I CGWCG 4 cut(s) 147, 313, 341, 496
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 2 cut(s) 180, 336
HpyCH4V TGCA 2 cut(s) 131, 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 227, 244, 281
HpySE526I ACGT 2 cut(s) 180, 336
Hsp92I GRCGYC 3 cut(s) 305, 371, 494
HspAI GCGC 6 cut(s) 14, 40, 80, 82, 112, 160
KspAI GTTAAC 1 cut(s) 394
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 3 cut(s) 321, 353, 364
LguI GCTCTTC 1 cut(s) 245
LpnPI CCDG 7 cut(s) 31, 141, 152, 165, 276, 388, 492
Lsp1109I GCAGC 2 cut(s) 250, 447
LweI GCATC 1 cut(s) 140
MaeII ACGT 2 cut(s) 180, 336
MalI GATC 3 cut(s) 323, 355, 366
MauBI CGCGCGCG 1 cut(s) 80
MbiI CCGCTC 2 cut(s) 255, 389
MboI GATC 3 cut(s) 321, 353, 364
MboII GAAGA 5 cut(s) 37, 48, 87, 90, 262
MhlI GDGCHC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 186
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 4 cut(s) 18, 139, 263, 479
MspR9I CCNGG 2 cut(s) 18, 139
MwoI GCNNNNNNNGC 4 cut(s) 13, 227, 244, 281
NciI CCSGG 2 cut(s) 18, 139
NdeII GATC 3 cut(s) 321, 353, 364
NlaIV GGNNCC 2 cut(s) 150, 222
NmeAIII GCCGAG 2 cut(s) 322, 352
NruI TCGCGA 1 cut(s) 421
NspV TTCGAA 1 cut(s) 170
PauI GCGCGC 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 317, 342
PfeI GAWTC 1 cut(s) 172
PflFI GACNNNGTC 3 cut(s) 202, 307, 335
PkrI GCNGC 6 cut(s) 240, 243, 246, 277, 434, 437
Ple19I CGATCG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 150, 222
PspPI GGNCC 1 cut(s) 149
PsyI GACNNNGTC 3 cut(s) 202, 307, 335
PteI GCGCGC 1 cut(s) 80
PvuI CGATCG 1 cut(s) 324
RruI TCGCGA 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 444
SacII CCGCGG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 6 cut(s) 239, 242, 245, 276, 433, 436
Sau3AI GATC 3 cut(s) 321, 353, 364
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 18, 139
SduI GDGCHC 1 cut(s) 320
SetI ASST 5 cut(s) 183, 206, 339, 409, 463
SfaNI GCATC 1 cut(s) 140
Sfr303I CCGCGG 1 cut(s) 245
SfuI TTCGAA 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 245
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 16, 137
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 2 cut(s) 183, 339
TaqI TCGA 1 cut(s) 170
TauI GCSGC 4 cut(s) 244, 247, 278, 435
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseI GCWGC 2 cut(s) 238, 435
TspGWI ACGGA 1 cut(s) 411
Tth111I GACNNNGTC 3 cut(s) 202, 307, 335
VneI GTGCAC 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.